| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2817848 = | 57 (0.700) | 6 (0.070) | 4/98 | NT | 7.2% | intergenic (‑46/+189) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase |
| ? | W3110S.gb | 2817873 = | 97 (1.190) | intergenic (‑71/+164) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase | |||||
CAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAT > W3110S.gb/2817778‑2817918 | cAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATccc > 1:2339636/1‑71 (MQ=255) cTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGc < 1:7313743/71‑1 (MQ=255) tCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCgg < 1:6312542/69‑1 (MQ=255) cgaGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTa > 1:7608834/1‑70 (MQ=255) aGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATcc < 1:7834723/71‑1 (MQ=255) aGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATcc < 1:4185292/71‑1 (MQ=255) aaTCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCata > 1:1596134/1‑71 (MQ=255) tCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCAtata < 1:3220309/71‑1 (MQ=255) atgccatgactgcttagatgtaatgtgtttgtcattgcttacttttTGGCATTATCCATCATATAACGcc > 1:6867517‑M1/47‑70 (MQ=255) gccatgactgcttagatgtaatgtgtttgtcattgcttacttttCGGCATTATCCATCATATAACGCCaa > 1:1995392‑M1/45‑70 (MQ=255) gccatgactgcttagatgtaatgtgtttgtcattgcttacttttCGGCATTATCCATCATATAACGCCaa < 1:142656‑M1/26‑1 (MQ=255) gccatgactgcttagatgtaatgtgtttgtcattgcttacttttCGGCATTATCCATCATATAACGCCaa < 1:3013489‑M1/26‑1 (MQ=255) gccatgactgcttagatgtaatgtgtttgtcattgcttacttttCGGCATTATCCATCATATAACGCCaa < 1:7790280‑M1/26‑1 (MQ=255) tttGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGcc < 1:832803/67‑1 (MQ=255) tGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa > 1:3717173/1‑46 (MQ=255) tGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACg > 1:3958074/1‑63 (MQ=255) tGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaaaaa < 1:2979715/70‑1 (MQ=255) tGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaaa < 1:4071230/68‑1 (MQ=255) gCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAg < 1:1891775/70‑1 (MQ=255) cTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGc < 1:2289432/71‑1 (MQ=255) cTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGc < 1:7801133/71‑1 (MQ=255) gAAAGATTAAAAGAGTCGGGTCTCTCTGTCTCCCgg < 1:1025095/36‑1 (MQ=255) gAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCa < 1:7361376/69‑1 (MQ=255) gAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCa < 1:2120614/69‑1 (MQ=255) aaaGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAAt < 1:308571/70‑1 (MQ=255) aaaGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATg < 1:3389139/71‑1 (MQ=255) aaaGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATg < 1:1907868/71‑1 (MQ=255) aaGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAAc < 1:2536538/52‑1 (MQ=255) aGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCatat < 1:6608828/48‑1 (MQ=255) gATTAAAAGAGTCGGGTCTCTCTGTATCCCTGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa < 1:3736022/71‑1 (MQ=255) gATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCa < 1:7000412/54‑1 (MQ=255) gATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAAt > 1:4801345/1‑67 (MQ=255) gATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATg > 1:1400896/1‑68 (MQ=255) gATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa < 1:554342/71‑1 (MQ=255) gATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATAATATAACGCCAAAAAGTAAGCAATGACa < 1:3133591/71‑1 (MQ=255) gATTAAAAGAGTCGGGGCTCTCTGTAACCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa < 1:7258975/71‑1 (MQ=255) aaaGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCAtata < 1:2830080/43‑1 (MQ=255) aaaGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCAtata < 1:244364/43‑1 (MQ=255) aaaGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAaca > 1:474993/1‑70 (MQ=255) aaGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAAcaca < 1:4490962/71‑1 (MQ=255) aaGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAAcaca < 1:2568794/71‑1 (MQ=255) agagTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACAt > 1:6192187/1‑71 (MQ=255) gtttgtcattgcttactcttCGGCATTATCCATCATATAACGCCaaaaa < 1:4339970‑M1/29‑1 (MQ=255) gggTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACAt < 1:643004/70‑1 (MQ=255) ggTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATc < 1:7506985/70‑1 (MQ=255) gTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa < 1:6227552/56‑1 (MQ=255) gTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:5524155/1‑70 (MQ=255) ctctctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 1:3077193/1‑71 (MQ=255) ctctctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 1:6497853/1‑71 (MQ=255) tctctGTATGCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACATACACATTACa < 1:6247018/64‑1 (MQ=255) tctctGTATCCCGGCATTATCCATCATATAACGCCaaaaa > 1:1244144/1‑40 (MQ=255) tctctGTATCCCGGCATTATCCATCATATAACGCCa < 1:7072818/36‑1 (MQ=255) tctctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 1:4803495/1‑70 (MQ=255) tctctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 1:1878762/1‑70 (MQ=255) tctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGt < 1:4515231/40‑1 (MQ=255) tctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGt < 1:630700/40‑1 (MQ=255) tctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTa < 1:440230/66‑1 (MQ=255) tctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 1:2864808/1‑68 (MQ=255) tctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 1:2842650/1‑68 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa < 1:6695471/49‑1 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTa > 1:2812893/1‑58 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAg < 1:3662948/69‑1 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAg < 1:1735321/69‑1 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGt > 1:2056564/1‑70 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCAAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGt > 1:7024777/1‑70 (MQ=255) gTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCa < 1:1182534/42‑1 (MQ=255) gTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCa < 1:4624289/42‑1 (MQ=255) gTATCCCGGCATTATCCATCATAT‑ACGCCAAAAAGTAAGCa < 1:5083361/41‑1 (MQ=38) tATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACAt < 1:947098/59‑1 (MQ=255) tATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGt < 1:724931/68‑1 (MQ=255) tATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTc < 1:3721038/69‑1 (MQ=255) tATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCa > 1:3750783/1‑70 (MQ=255) cccGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa < 1:6962308/44‑1 (MQ=255) cccGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATgg > 1:125814/1‑70 (MQ=255) ccGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACaaa > 1:2887408/1‑45 (MQ=255) cGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATg < 1:2864701/39‑1 (MQ=255) cGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAt < 1:1926625/71‑1 (MQ=255) | CAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAT > W3110S.gb/2817778‑2817918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |