| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3064697 | 156 (1.920) | 18 (0.230) | 8/94 | NT | 11.2% | coding (1240/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase |
| ? | W3110S.gb | = 3064731 | 136 (1.740) | coding (1274/1479 nt) | ygfH | propionyl‑CoA:succinate‑CoA transferase | |||||
TGTCGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3064626‑3064697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgATGATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTG < W3110S.gb/3064731‑3064663 TGTCGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCAT > 1:1598727/1‑71 tctATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCAT < 1:1275680/66‑1 TCGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATG < 1:7000327/70‑1 TCGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCAT < 1:4772311/69‑1 TCGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCAT < 1:2788595/69‑1 CGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCAT < 1:4042743/53‑1 CGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCAT < 1:1805547/53‑1 CTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGTAGCCAT < 1:9041/44‑1 CTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCTGCCAT < 1:3395703/44‑1 CTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCAT < 1:764965/44‑1 AAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATG > 1:3716864/1‑42 AGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCTGTGATCA < 1:5495466/71‑1 AGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCTGTGATCA < 1:5773247/71‑1 GGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGTGATCAA > 1:2226008/1‑71 GCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGTGATCAAC < 1:3243855/71‑1 GCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGTGATCAAC < 1:3275719/71‑1 GATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCTGTGATCA > 1:376927/1‑65 GATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCTGTGATCA > 1:386387/1‑65 GATCTCAACCGTCGTGCCAATGTGCAGCCATGTTGATCACTTTGACGCTGTGTTCGCTGTGATCA > 1:5449321/1‑65 CAACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGT > 1:1105185/1‑55 CAACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGT > 1:5613768/1‑55 CAACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGT > 1:7688538/1‑55 AACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGC < 1:5432542/66‑1 AACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGC < 1:5903310/66‑1 AACCGTCGTGCCAATGTGCAGCCATGATGATCACTTTGACGCTG < 1:3905189/44‑1 CAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGC < 1:921818/40‑1 CAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGC < 1:784653/40‑1 CAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGC < 1:4987625/40‑1 CAATGTGCAGCCATGATGATCACTTTGACGCTGTGTTCGC < 1:4596447/40‑1 TGATGATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTG < 1:2347997/71‑1 GATGATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTT < 1:1429741/61‑1 TGTCGATCTTTATGGCCCCGTCGATTGCTAAAGAAGGCAAGATCTCAACCGTCGTGCCAATGTGCAGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3064626‑3064697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgATGATCACTTTGACGCTGTGTTCGCTGTGATCAACATGGCTGCACATTGGCACGACGGTTGAGATCTTG < W3110S.gb/3064731‑3064663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |