New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 3229565	82 (1.010)	16 (0.220)	5/86	NT	18.9%	coding (2022/2352 nt)	ygjK	predicted glycosyl hydrolase
	?	W3110S.gb	= 3229588	65 (0.910)					coding (2045/2352 nt)	ygjK	predicted glycosyl hydrolase

TAAAGGGCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3229490‑3229565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggtgTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACCGTTA  <  W3110S.gb/3229588‑3229520                                                                                                                                                   TAAAGGGCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGGCAACTCAGGCCAATGCCGACGCGGTGGTGA                                                                            <  1:3288235/71‑1   AAGGTCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAA                                                                           <  1:2905797/70‑1   AAGGGCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAG                                                                          >  1:2550495/1‑71    AGGGCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGG                                                                         <  1:500492/71‑1     GGGCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGT                                                                        <  1:7236341/71‑1      GGCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGTCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTG                                                                       <  1:3930844/71‑1                CTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTG                                                                       >  1:2141320/1‑61                CTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTG                                                                       >  1:6651782/1‑61                         GCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGAT                                                       <  1:4446693/68‑1                         GCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGAT                                                       <  1:5682959/68‑1                                AACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAGCATCA                                              <  1:1882511/70‑1                                AACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAGCATCA                                              <  1:5463374/70‑1                                AACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAGCATCA                                              <  1:3572833/70‑1                                 ACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAGCATCAC                                             <  1:7576288/70‑1                                 ACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAGCATCAC                                             <  1:4490457/70‑1                                 ACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAGCATCAC                                             <  1:6404017/70‑1                                             CGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAG                                                   >  1:3683096/1‑52                                             CGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAG                                                   >  1:3276671/1‑52                                             CGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAG                                                   >  1:2850530/1‑52                                             CGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAG                                                   >  1:7386241/1‑52                                             CGCAGGCCAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAG                                                   >  1:5425818/1‑52                                             CGCAGGCCAATACCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGAG                                                   >  1:4804677/1‑52                                                    CAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGA                                                    <  1:1579451/44‑1                                                    CAATGCCGACGCGGTGGTGAAGGTGTTGAACTCTTTAGGATCGA                                                    <  1:2161685/44‑1                                                                       AAGGTGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACC      >  1:3453165/1‑71                                                                       AAGGTGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACC      >  1:3077070/1‑71                                                                       AAGGTGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACC      >  1:7084301/1‑71                                                                       AAGGTGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGG                            >  1:5602632/1‑49                                                                        AGGTGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACCG     >  1:3468655/1‑71                                                                        AGGTGTTGAACTCTTTAGGATCGAGCATCACCTTCA                                        >  1:4376888/1‑36                                                                          GTGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTC                              >  1:3027454/1‑44                                                                           TGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACCGTTA  <  1:6144059/71‑1                                                                           TGTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACCGTT   >  1:129710/1‑70                                                                            GTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACCGTTA  >  1:7371126/1‑70                                                                                                                                                   TAAAGGGCCGGAAGGCTGGTCGCCGCTGTTTAACGGTGCGGCAACGCAGGCCAATGCCGACGCGGTGGTGAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3229490‑3229565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggtgTTGAACTCTTTAGGATCGAGCATCACCTTCACCACCGCGTCGGCATTGGCCTGCGTTGCCGCACCGTTA  <  W3110S.gb/3229588‑3229520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.