New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 3906586121 (1.490)6 (0.090) 3/82 NT 5.1% coding (112/1182 nt) xylH D‑xylose transporter subunit
?W3110S.gb = 3906596 123 (1.810)coding (102/1182 nt) xylH D‑xylose transporter subunit

CTGGCGTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3906509‑3906586
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgattgcAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGTC  <  W3110S.gb/3906596‑3906527
                                                                                                                                                    
CTGGCTTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA                                                                               >  1:3623996/1‑71
   GCGTAACAGGTTGGAGTCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCAT                                                                              <  1:4327670/69‑1
   GCGTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA                                                                               <  1:2598153/68‑1
     GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATT                                                                          >  1:5945843/1‑71
     GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATT                                                                          <  1:1872090/71‑1
     GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATT                                                                          >  1:816528/1‑71
     GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGAACCATCGGTTGTCCAGGTAAAGAACAGCATGATT                                                                          <  1:7596301/71‑1
          AGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA                                                                               <  1:7394717/61‑1
          AGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA                                                                               <  1:213301/61‑1
               GGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC                                                                        >  1:1430452/1‑63
               GGAGACGTTACGGGCGCTTAAGTAGGCACCAACGGTGGTCCAGGTAAAGAACAGCATGATTGC                                                                        >  1:7372574/1‑63
                GAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:2592652/61‑1
                   ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGTACAGCATGATTGC                                                                        >  1:1874865/1‑59
                   ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC                                                                        >  1:7201926/1‑59
                   ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC                                                                        >  1:3530939/1‑59
                   ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         >  1:331852/1‑58
                     GTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC                                                                        <  1:2767006/57‑1
                        ACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCAGCTATCATCGCAATC                                                        <  1:4881213/70‑1
                          GGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCAT                                                                              <  1:7402241/46‑1
                          GGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCAT                                                                              <  1:7373089/46‑1
                                  AAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA                                                                               >  1:3284521/1‑37
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:7485665/40‑1
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:5244035/40‑1
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:6183352/40‑1
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:6275965/40‑1
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:3551289/40‑1
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:3517603/40‑1
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:6841131/40‑1
                                     TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:7063688/40‑1
                                        GCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG                                                                         <  1:5050486/37‑1
                                                  TGGTCCAGGTAAAGAACAGCATGATTGCAGCTATCATCGC                                                            <  1:4030933/40‑1
                                                  TGGTCCAGGTAAAGAACAGCATGATTGCAGCTATCATCGC                                                            <  1:5547010/40‑1
                                                        AGGTAAAGAACAGCATGATTGCAGCTATCATCGCAAT                                                         >  1:381896/1‑37
                                                        AGGTAAAGAACAGCATGATTGCAGCTATCATCGCAAT                                                         >  1:6981248/1‑37
                                                        AGGTAAAGAACAGCATGATTGCAGCTATCATCGCAA                                                          >  1:2692855/1‑36
                                                                      ATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC                                          <  1:4603592/38‑1
                                                                      ATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC                                          <  1:1771467/38‑1
                                                                      ATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC                                          <  1:224944/38‑1
                                                                       TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGT        <  1:3377730/71‑1
                                                                       TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCG         >  1:6731332/1‑70
                                                                       TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCG         >  1:2386825/1‑70
                                                                       TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTT                  <  1:1747364/61‑1
                                                                       TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTAC                    >  1:1611783/1‑59
                                                                          TTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTT                  <  1:742490/58‑1
                                                                           TGCAGCTGTCATCGCAATCATGCTGTTCTTTACCTGGACCA                                  >  1:5940749/1‑41
                                                                           TGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCA                                  >  1:3703734/1‑41
                                                                            GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT   >  1:3037012/1‑71
                                                                            GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACG    <  1:7576597/70‑1
                                                                            GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGT        <  1:7685325/66‑1
                                                                            GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAA                >  1:1555942/1‑58
                                                                            GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAA                >  1:2031986/1‑58
                                                                            GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGT                          >  1:3953450/1‑48
                                                                            GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGT                          >  1:33515/1‑48
                                                                             CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATTGTGCCTACTTAAGCGC            >  1:4718179/1‑61
                                                                             CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGTC  <  1:564471/71‑1
                                                                             CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT   <  1:6380147/70‑1
                                                                             CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT   <  1:6235441/70‑1
                                                                             CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT   <  1:5699933/70‑1
                                                                             CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT   <  1:5554142/70‑1
                                                                             CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT   <  1:7930106/70‑1
                                                                                                                                                    
CTGGCGTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3906509‑3906586
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgattgcAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGTC  <  W3110S.gb/3906596‑3906527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.