| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3906586 | 121 (1.490) | 6 (0.090) | 3/82 | NT | 5.1% | coding (112/1182 nt) | xylH | D‑xylose transporter subunit |
| ? | W3110S.gb | = 3906596 | 123 (1.810) | coding (102/1182 nt) | xylH | D‑xylose transporter subunit | |||||
CTGGCGTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3906509‑3906586‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgattgcAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGTC < W3110S.gb/3906596‑3906527 CTGGCTTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA > 1:3623996/1‑71 GCGTAACAGGTTGGAGTCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCAT < 1:4327670/69‑1 GCGTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA < 1:2598153/68‑1 GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATT > 1:5945843/1‑71 GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATT < 1:1872090/71‑1 GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATT > 1:816528/1‑71 GTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGAACCATCGGTTGTCCAGGTAAAGAACAGCATGATT < 1:7596301/71‑1 AGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA < 1:7394717/61‑1 AGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA < 1:213301/61‑1 GGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC > 1:1430452/1‑63 GGAGACGTTACGGGCGCTTAAGTAGGCACCAACGGTGGTCCAGGTAAAGAACAGCATGATTGC > 1:7372574/1‑63 GAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:2592652/61‑1 ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGTACAGCATGATTGC > 1:1874865/1‑59 ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC > 1:7201926/1‑59 ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC > 1:3530939/1‑59 ACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG > 1:331852/1‑58 GTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC < 1:2767006/57‑1 ACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCAGCTATCATCGCAATC < 1:4881213/70‑1 GGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCAT < 1:7402241/46‑1 GGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCAT < 1:7373089/46‑1 AAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCA > 1:3284521/1‑37 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:7485665/40‑1 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:5244035/40‑1 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:6183352/40‑1 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:6275965/40‑1 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:3551289/40‑1 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:3517603/40‑1 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:6841131/40‑1 TAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:7063688/40‑1 GCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTG < 1:5050486/37‑1 TGGTCCAGGTAAAGAACAGCATGATTGCAGCTATCATCGC < 1:4030933/40‑1 TGGTCCAGGTAAAGAACAGCATGATTGCAGCTATCATCGC < 1:5547010/40‑1 AGGTAAAGAACAGCATGATTGCAGCTATCATCGCAAT > 1:381896/1‑37 AGGTAAAGAACAGCATGATTGCAGCTATCATCGCAAT > 1:6981248/1‑37 AGGTAAAGAACAGCATGATTGCAGCTATCATCGCAA > 1:2692855/1‑36 ATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC < 1:4603592/38‑1 ATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC < 1:1771467/38‑1 ATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC < 1:224944/38‑1 TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGT < 1:3377730/71‑1 TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCG > 1:6731332/1‑70 TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCG > 1:2386825/1‑70 TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTT < 1:1747364/61‑1 TGATTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTAC > 1:1611783/1‑59 TTGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTT < 1:742490/58‑1 TGCAGCTGTCATCGCAATCATGCTGTTCTTTACCTGGACCA > 1:5940749/1‑41 TGCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCA > 1:3703734/1‑41 GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT > 1:3037012/1‑71 GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACG < 1:7576597/70‑1 GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGT < 1:7685325/66‑1 GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAA > 1:1555942/1‑58 GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAA > 1:2031986/1‑58 GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGT > 1:3953450/1‑48 GCAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGT > 1:33515/1‑48 CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATTGTGCCTACTTAAGCGC > 1:4718179/1‑61 CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGTC < 1:564471/71‑1 CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT < 1:6380147/70‑1 CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT < 1:6235441/70‑1 CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT < 1:5699933/70‑1 CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT < 1:5554142/70‑1 CAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGT < 1:7930106/70‑1 CTGGCGTAACAGGTTGGAGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3906509‑3906586‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgattgcAGCTATCATCGCAATCATGCTGTTCTTTACCTGGACCACCGATGGTGCCTACTTAAGCGCCCGTAACGTC < W3110S.gb/3906596‑3906527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |