| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3906586 | 121 (1.490) | 6 (0.090) | 3/82 | NT | 5.1% | coding (112/1182 nt) | xylH | D‑xylose transporter subunit |
| ? | W3110S.gb | = 3906596 | 123 (1.810) | coding (102/1182 nt) | xylH | D‑xylose transporter subunit | |||||
Only 100 of 182 total aligned reads displayed.
AGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGTCGGTACGG > W3110S.gb/3906526‑3906663 | agaCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCt < 1:313106/71‑1 (MQ=255) aCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgc > 1:3037012‑M2/1‑69 (MQ=255) aCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTg < 1:6380147‑M2/70‑2 (MQ=255) aCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTg < 1:6235441‑M2/70‑2 (MQ=255) aCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTg < 1:5699933‑M2/70‑2 (MQ=255) aCGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTg < 1:5554142‑M2/70‑2 (MQ=255) cGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgc < 1:7576597‑M2/70‑3 (MQ=255) aCGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgcaatca < 1:3377730‑M2/71‑8 (MQ=255) ggCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAAtcatca > 1:6794956/1‑71 (MQ=255) ggCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAAtcatca > 1:5200599/1‑71 (MQ=255) ttAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgc > 1:1555942‑M2/1‑56 (MQ=255) ttAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgc > 1:2031986‑M2/1‑56 (MQ=255) ttAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAatcatc > 1:2923103/1‑65 (MQ=255) tAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGa > 1:4023289/1‑71 (MQ=255) aaGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgcaatca < 1:1747364‑M2/61‑8 (MQ=255) aaGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgcaa < 1:742490‑M2/58‑5 (MQ=255) aaGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAg < 1:4453938/69‑1 (MQ=255) aaGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAg < 1:7566868/69‑1 (MQ=255) aaGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGAc > 1:5826353/1‑71 (MQ=255) aaGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGAc > 1:4348569/1‑71 (MQ=255) aGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGAcc > 1:2130244/1‑71 (MQ=255) aGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGAcc > 1:4722217/1‑71 (MQ=255) aGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGAc < 1:7737210/70‑1 (MQ=255) gTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgcaatca > 1:1611783‑M2/1‑52 (MQ=255) tAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAatcatc < 1:3528499/60‑1 (MQ=255) tAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAatcatc < 1:9200/60‑1 (MQ=255) aGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTg > 1:4998015/1‑70 (MQ=255) aGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTg > 1:3783247/1‑70 (MQ=255) ggCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCa < 1:4677787/71‑1 (MQ=255) ggCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCa < 1:5505653/71‑1 (MQ=255) aCCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgc > 1:3953450‑M2/1‑46 (MQ=255) aCCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAatcatc > 1:4308890/1‑55 (MQ=255) aCCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCaaa < 1:1392353/70‑1 (MQ=255) aCCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAt > 1:7170789/1‑71 (MQ=255) ccATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAt > 1:6516783/1‑70 (MQ=255) ccATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAt > 1:1128399/1‑70 (MQ=255) cATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGAc > 1:3689112/1‑61 (MQ=255) aTCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAg < 1:7719225/58‑1 (MQ=255) aTCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAg < 1:4780389/58‑1 (MQ=255) aTCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAg < 1:4946224/58‑1 (MQ=255) tCGGGGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGacg < 1:7643354/57‑3 (MQ=255) cGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGt > 1:4522514/1‑71 (MQ=255) gtggtCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGa < 1:2475486/71‑1 (MQ=255) gtggtCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGa < 1:5726563/71‑1 (MQ=255) tggtCCAGGTAAAGAACAGCATGATTGCGATGATAGCTgca > 1:3703734‑M2/1‑38 (MQ=255) tggtCCAGGTAAAGAACAGCATGATTGCGATGACAGCTgca > 1:5940749‑M2/1‑38 (MQ=255) tCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGa < 1:3984990/48‑1 (MQ=255) tCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGa < 1:4127309/48‑1 (MQ=255) tCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGAtt < 1:6072586/69‑1 (MQ=255) cAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAg > 1:4736800/1‑71 (MQ=255) cAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAg > 1:6532596/1‑71 (MQ=255) tAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAtt < 1:5537311/55‑1 (MQ=255) aaaGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCg > 1:7062552/1‑70 (MQ=255) aaGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCg > 1:4384270/1‑69 (MQ=255) aaGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGga < 1:1225440/71‑1 (MQ=255) aGAACATCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgag < 1:2594071/71‑1 (MQ=255) aGAACAGCATGATTGCGATGATAGCTGCAATCATCAc > 1:7631638/1‑37 (MQ=255) aGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgag < 1:2261395/71‑1 (MQ=255) aGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgag < 1:390165/71‑1 (MQ=255) aGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgag < 1:884200/71‑1 (MQ=255) aGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgag < 1:2575360/71‑1 (MQ=255) aGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgag < 1:5860201/71‑1 (MQ=255) gAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAtt < 1:6102989/51‑1 (MQ=255) gAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAtt < 1:185630/51‑1 (MQ=255) gAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgaga < 1:4185171/71‑1 (MQ=255) gAACAGCATGATTGCGATGATAGCTGCAATCATAACGAAGACCTGCAAAtt < 1:4065213/51‑1 (MQ=255) aCAGCATGATTGCGATGATAGCTGCAATCATCACGaa < 1:1972667/37‑1 (MQ=255) aCAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGaa < 1:504581/70‑1 (MQ=255) aCAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAg > 1:3014195/1‑71 (MQ=255) aCAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAg > 1:26558/1‑71 (MQ=255) aGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGcc < 1:1325947/71‑1 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAtt < 1:4869103/46‑1 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAtt < 1:3280804/46‑1 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTc > 1:784355/1‑47 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTc < 1:6012696/47‑1 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTc > 1:5424790/1‑47 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTc > 1:2201687/1‑47 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTc > 1:2359566/1‑47 (MQ=255) gCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTc > 1:7930953/1‑47 (MQ=255) aTGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCgg < 1:5780665/61‑1 (MQ=255) aTGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCAcc < 1:6696890/71‑1 (MQ=255) tGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAAtt < 1:688869/43‑1 (MQ=255) tGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCg < 1:5639325/71‑1 (MQ=255) tGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCg > 1:6362927/1‑71 (MQ=255) gATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCa > 1:1184907/1‑53 (MQ=255) gATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGgag < 1:1691653/61‑1 (MQ=255) aTTGCGATGATAGCTgcaatcatgctgttctttacct > 1:381896‑M2/1‑15 (MQ=255) aTTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGa > 1:7339701/1‑71 (MQ=255) ttGCGATGATAGCTgcaatcatgctgttctttacct > 1:2692855‑M2/1‑14 (MQ=255) ttGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGaa < 1:1119226/61‑1 (MQ=255) ttGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGAt > 1:2523487/1‑71 (MQ=255) gCGATGATAGCTgcaatcatgctgttctttacctggacca < 1:5547010‑M2/40‑29 (MQ=255) gCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGga < 1:1268967/56‑1 (MQ=255) cGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGt < 1:7822360/70‑1 (MQ=255) gatgatAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCa < 1:141882/47‑1 (MQ=255) atgatAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGTCgg > 1:5692165/1‑71 (MQ=255) atgatAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGTCgg > 1:6987138/1‑71 (MQ=255) tgatAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGTCgg > 1:6723316/1‑70 (MQ=255) tAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGTCGGTACg < 1:1657365/71‑1 (MQ=255) aGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGTCGGTACgg > 1:7897864/1‑71 (MQ=255) | AGACGTTACGGGCGCTTAAGTAGGCACCATCGGTGGTCCAGGTAAAGAACAGCATGATTGCGATGATAGCTGCAATCATCACGAAGACCTGCAAATTCAGTGATTTCAGCCCGGAGAAGCCACCGGATGTCGGTACGG > W3110S.gb/3906526‑3906663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |