| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4523153 | 140 (1.720) | 9 (0.120) | 3/94 | NT | 5.8% | intergenic (‑236/‑56) | fecI/insA | RNA polymerase, sigma 19 factor/IS1 repressor protein InsA |
| ? | W3110S.gb | = 4523173 | 159 (2.040) | intergenic (‑256/‑36) | fecI/insA | RNA polymerase, sigma 19 factor/IS1 repressor protein InsA | |||||
TGTCGGTCAGAATGACTCATGATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4523082‑4523153‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcAGTAAGTTGGCAGCATTACCGAAATCCCCATCCTTTAGGGCAGTGAGGATGTCAA < W3110S.gb/4523173‑4523119 TGTCGGTCAGAATGACTAATGATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTT < 1:2440550/71‑1 GTCGGTCAGAATGACTCATGATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTTC > 1:3679653/1‑71 GTCAGAATGACTCATGATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTT < 1:5840773/66‑1 GATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTTC > 1:1199404/1‑52 GATGTGGTCTGCTATTATTGACATCCTCACTGCCATAAAGGATGGGGATTTC > 1:7797271/1‑52 ATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTT < 1:1473971/50‑1 ATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTT < 1:5968086/50‑1 TTATTGACATCCTCACTGCCCTAAAGGATGGGGATTT > 1:3841491/1‑37 TTATTGACATCCTCACTGCCCTAAAGGATGGGGATTT > 1:6108161/1‑37 CCTCACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCATTACCG < 1:3657718/49‑1 CTCACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCATT < 1:3177616/44‑1 CTCACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCATT < 1:2995279/44‑1 CTCACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCATT < 1:6616148/44‑1 CTCACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCATT < 1:1549761/44‑1 CTCACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCATT < 1:969602/44‑1 ACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCAT > 1:4939977/1‑40 ACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCAT > 1:2293927/1‑40 ACTGCCCTAAAGGATGGGGATTTCAGTAAGTTGGCAGCAT > 1:7223087/1‑40 TCAGTAAGTTGGCAGCATTACCGAAATCCCCATCCTTTAGGGCAGTGAG > 1:1926378/1‑49 CAGTAAGTTGGCAGCATTACCGAAATCCCCATCCTTTAGGGCAGTGAGGATGTCAA < 1:4502578/56‑1 CAGTAAGTTGGCAGCATTACCGAAATCCCCATCCTTTAGGGCAGTGAGGATGTCAA < 1:2926455/56‑1 CAGTAAGTTGGCAGCATTACCGAAATCCCCATCCTTTAGGGCAGTGAGGATGTCAA < 1:6623382/56‑1 TGTCGGTCAGAATGACTCATGATGTGGTCTGCTATTATTGACATCCTCACTGCCCTAAAGGATGGGGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4523082‑4523153‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcAGTAAGTTGGCAGCATTACCGAAATCCCCATCCTTTAGGGCAGTGAGGATGTCAA < W3110S.gb/4523173‑4523119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |