| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4918 = | 60 (0.740) | 5 (0.070) | 3/84 | NT | 8.7% | coding (1185/1287 nt) | thrC | threonine synthase |
| ? | W3110S.gb | 4939 = | 53 (0.760) | coding (1206/1287 nt) | thrC | threonine synthase | |||||
GTTCCTCGGCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTT > W3110S.gb/4849‑4983 | atcatcaatttacgcaacgcagcaaaatcggcgggcagattatgtgaaagcaagggtaaatcagcacgtt < 1:2460747‑M1/1‑1 (MQ=255) tcatcaatttacgcaacgcagcaaaatcggcgggcagattatgtgaaagcaagggtaaatcagcacgtTCt < 1:6389397‑M1/3‑1 (MQ=255) ccTCGGCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGc > 1:591194/1‑71 (MQ=255) atcaatttacgcaacgcagcaaaatcggcgggcagattatgtgaaagcaagggtaaatcagcacgtTCTGc > 1:4536748‑M1/67‑71 (MQ=255) cTCGGCGCCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATc < 1:5896230/67‑1 (MQ=255) cTCGGCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGc < 1:4979195/70‑1 (MQ=255) cGGCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCa > 1:5199006/1‑70 (MQ=255) ggCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaaa < 1:7402152/71‑1 (MQ=255) ggCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaa < 1:2720736/70‑1 (MQ=255) ggCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaa > 1:2900774/1‑70 (MQ=255) ggCACCGCGCATCCGGCGAAATTTAAAGAGACCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaa < 1:7918535/70‑1 (MQ=255) gcgcATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaaa < 1:7585704/65‑1 (MQ=255) gcgcATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaaa < 1:270832/65‑1 (MQ=255) gcgcATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCt < 1:3627475/71‑1 (MQ=255) gcATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaa > 1:5960527/1‑62 (MQ=255) gcATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTgg > 1:5962803/1‑71 (MQ=255) aTCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTgg > 1:382636/1‑69 (MQ=255) agcaaaatcggcgggcagattatgtgaaagcaagggtaaatcagcacgtTCTGCCAAAAGAGCTGGCAGa > 1:3729468‑M1/50‑70 (MQ=255) ggCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAAc > 1:5039629/1‑71 (MQ=255) cGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGt > 1:6666844/1‑71 (MQ=255) aaaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGc > 1:3236602/1‑71 (MQ=255) aaaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGc > 1:7788097/1‑71 (MQ=255) aaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCt > 1:2497503/1‑71 (MQ=255) aaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCt > 1:5596612/1‑71 (MQ=255) aTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACg > 1:5434006/1‑66 (MQ=255) aTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCt > 1:6921023/1‑70 (MQ=255) ttAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAt > 1:1042357/1‑71 (MQ=255) aaaGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt < 1:5832305/70‑1 (MQ=255) aaaGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt < 1:421056/70‑1 (MQ=255) aaGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTa < 1:6070396/71‑1 (MQ=255) agagagCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAagag < 1:6390757/49‑1 (MQ=255) gcagattatgtgaaagcaagggtaaatcagcacgtTCTGCCAAAAGAGCTGGCa > 1:5292744‑M1/36‑54 (MQ=255) gcagattatgtgaaagcaagggtaaatcagcacgtTCTGCCAAAAGAGCTGGCa > 1:7569382‑M1/36‑54 (MQ=255) gcagattatgtgaaagcaagggtaaatcagcacgtTCTGCCAAAAGAGCTGGCa > 1:1057810‑M1/36‑54 (MQ=255) gagagCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaaaa > 1:7411849/1‑45 (MQ=255) gagagCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAagag < 1:3075917/48‑1 (MQ=255) agCGTGGAAGCGATTCTCGGTGAAACGTTGTATCTGCCAAAAGAGCTGGc < 1:3466241/50‑1 (MQ=255) agCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGc < 1:2070492/50‑1 (MQ=255) agCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:827560/71‑1 (MQ=255) agCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:2322517/71‑1 (MQ=255) cGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCaaa < 1:7213128/39‑1 (MQ=255) tatgtgaaagcaagggtaaatcagcacgtTCTGcc > 1:2663875‑M1/30‑35 (MQ=255) tatgtgaaagcaagggtaaatcagcacgtTCTGcc > 1:2267353‑M1/30‑35 (MQ=255) tGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCtt < 1:657057/71‑1 (MQ=255) tGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCtt < 1:3000322/71‑1 (MQ=255) gAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTc < 1:7122779/71‑1 (MQ=255) aaGCGATTCTCGGTGAAACGTTGGATCTGCCAAAagat > 1:1707853/1‑37 (MQ=255) aGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCttt < 1:2148190/68‑1 (MQ=255) aGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTca < 1:2318609/70‑1 (MQ=255) cGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACAt < 1:5459792/71‑1 (MQ=255) cGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACAt < 1:3716713/71‑1 (MQ=255) aagcaagggtaaatcagcacgtTCTGCCAAAAGAGCTgg < 1:3005743‑M1/17‑1 (MQ=255) gATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc < 1:5848635/58‑1 (MQ=255) gATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc < 1:5129393/58‑1 (MQ=255) gATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc < 1:788520/58‑1 (MQ=255) aTTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATaa < 1:2937154/71‑1 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGa > 1:3761573/1‑49 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGa > 1:335745/1‑49 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc > 1:739169/1‑56 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTAccc > 1:2102742/1‑56 (MQ=255) ttCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCtt > 1:7860275/1‑62 (MQ=255) ttCTCGCTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAAt > 1:13106/1‑71 (MQ=255) tcGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGAt < 1:7763986/47‑1 (MQ=255) ggTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTg < 1:6559309/43‑1 (MQ=255) ggTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTg < 1:862586/43‑1 (MQ=255) ggTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTg < 1:2644661/43‑1 (MQ=255) gTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAAt > 1:117875/1‑65 (MQ=255) tGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTa > 1:6640655/1‑46 (MQ=255) gAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGc < 1:548435/38‑1 (MQ=255) gAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCccgc > 1:3632346/1‑71 (MQ=255) gAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCccgc > 1:1932713/1‑71 (MQ=255) gTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGAtt < 1:6430040/71‑1 (MQ=255) gTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGAtt < 1:6403160/71‑1 (MQ=255) ttGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACGCTTGCTTTCACATAATCTGCCCGCCGAtt < 1:1456381/70‑1 (MQ=255) ttGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGAttt < 1:4937119/71‑1 (MQ=255) ggATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt > 1:5270922/1‑35 (MQ=255) ggATCTGCCAAAAGAGCTGGCAGAACGTGCTGAtt > 1:592777/1‑35 (MQ=255) aTCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:2470107/40‑1 (MQ=255) aTCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCtt < 1:1009335/40‑1 (MQ=255) | GTTCCTCGGCACCGCGCATCCGGCGAAATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTGCCCGCCGATTT > W3110S.gb/4849‑4983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |