| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 77 (0.950) | 278 (4.400) +CGCGTACAACT |
79/76 | NT | 80.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 101 (1.240) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 512 total aligned reads displayed.
CACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTT > W3110S.gb/69992‑70131 | gcgagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtactcgTc < 1:2522953‑M1/2‑1 (MQ=255)gcgagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTc < 1:6719981‑M1/2‑1 (MQ=255) ccGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatcca < 1:2173518/71‑1 (MQ=255) gaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaa < 1:862611‑M1/5‑1 (MQ=255) gaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaa < 1:7917036‑M1/5‑1 (MQ=255) aacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgt < 1:30931‑M1/1‑1 (MQ=255) aacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaa > 1:1934290‑M1/65‑71 (MQ=255) acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:1082131‑M1/64‑71 (MQ=255) acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:4199130‑M1/64‑71 (MQ=255) acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:3391509‑M1/64‑71 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaa > 1:3686133‑M1/63‑71 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaa > 1:2648985‑M1/63‑71 (MQ=255) atctggcgtgtaattgaagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:6085089‑M1/61‑68 (MQ=255) tctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑Cg < 1:7877914‑M1/12‑1 (MQ=255) tCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:3493816/65‑1 (MQ=255) tCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa > 1:1389629/1‑65 (MQ=255) ggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑Cggg < 1:1564187‑M1/14‑1 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑c > 1:6776722‑M1/56‑66 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑c > 1:5766061‑M1/56‑66 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑c > 1:644540‑M1/56‑66 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑Cg > 1:6262244‑M1/56‑67 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGt > 1:1271952‑M1/56‑70 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTa > 1:6869072‑M1/56‑71 (MQ=255) cgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTAt > 1:4085963‑M1/55‑71 (MQ=255) gtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATg < 1:1003569‑M1/18‑1 (MQ=255) caGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATgg < 1:2929436/71‑1 (MQ=255) gtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATg < 1:6006847‑M1/18‑1 (MQ=255) taattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑Cggg > 1:6149134‑M1/51‑64 (MQ=255) taattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGgag > 1:4345453‑M1/51‑71 (MQ=255) attgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGgaga > 1:1661222‑M1/49‑70 (MQ=255) attgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGgaga > 1:3366510‑M1/49‑70 (MQ=255) attgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGga < 1:4780401‑M1/20‑1 (MQ=255) attgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGaa > 1:7048236‑M1/49‑71 (MQ=255) ttgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:2408692‑M1/48‑55 (MQ=255) ttgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGaaa > 1:2068474‑M1/48‑71 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGaaa < 1:5573005‑M1/24‑1 (MQ=255) aCTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAAc < 1:5216928/70‑1 (MQ=255) agtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAg < 1:708703‑M1/27‑1 (MQ=255) agtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGt > 1:1877526‑M1/44‑71 (MQ=255) tgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATgg > 1:3729262‑M1/42‑60 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTaga > 1:5242590‑M1/40‑70 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTa < 1:2598804‑M1/29‑1 (MQ=255) tcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGt > 1:2544278‑M1/39‑53 (MQ=255) catagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATgg > 1:6347008‑M1/38‑56 (MQ=255) atagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGt > 1:7503925‑M1/37‑71 (MQ=255) tagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGtt > 1:3995725‑M1/36‑71 (MQ=255) tagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGtt > 1:2002364‑M1/36‑71 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgTc < 1:738217‑M1/2‑1 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGt > 1:3438197‑M1/34‑61 (MQ=255) cggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGc > 1:5174968‑M1/33‑71 (MQ=255) aGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGc < 1:5369051/70‑1 (MQ=255) ggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGa > 1:4920338‑M1/32‑71 (MQ=255) gtcatttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGtt < 1:1824144‑M1/36‑1 (MQ=255) tttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCTATaaaa > 1:72030‑M1/27‑71 (MQ=255) tttatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa > 1:7837527‑M1/27‑71 (MQ=255) aTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa < 1:4568636/71‑1 (MQ=255) ttGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGgaga > 1:5410562/1‑47 (MQ=255) ttGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa < 1:3299657/71‑1 (MQ=255) tatgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTag < 1:1737031‑M1/30‑1 (MQ=255) gCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa > 1:585511/1‑68 (MQ=255) atgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGt > 1:695043‑M1/24‑38 (MQ=255) atgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTagaga > 1:4679020‑M1/24‑56 (MQ=255) atgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTagaga > 1:4145600‑M1/24‑56 (MQ=255) atgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg > 1:7284752‑M1/24‑70 (MQ=255) atgtcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc < 1:1710946‑M1/48‑1 (MQ=255) tcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt < 1:5461623‑M1/50‑1 (MQ=255) tcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt < 1:7576254‑M1/50‑1 (MQ=255) tcagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:6517991‑M1/21‑71 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTg < 1:322487/57‑1 (MQ=255) cagacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGt > 1:5642943‑M1/20‑54 (MQ=255) agacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGga < 1:4422789‑M1/20‑1 (MQ=255) agacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGaa > 1:1423149‑M1/19‑41 (MQ=255) agacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:2781460‑M1/53‑1 (MQ=255) agacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:4250854‑M1/53‑1 (MQ=255) agacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGAAGAGAGTTGCGATa < 1:1764544‑M1/42‑1 (MQ=255) gacttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:3645527‑M1/18‑71 (MQ=255) acttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt > 1:2221484‑M1/17‑71 (MQ=255) cATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACa < 1:7685650/41‑1 (MQ=255) ttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGa > 1:5281658‑M1/15‑54 (MQ=255) ttgagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGa > 1:2297671‑M1/15‑54 (MQ=255) gagttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa < 1:5808075‑M1/59‑1 (MQ=255) agttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAAc < 1:1206666‑M1/25‑1 (MQ=255) agttgtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:5916132‑M1/12‑70 (MQ=255) ttgtaagcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:5496286‑M1/62‑1 (MQ=255) gtacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTa > 1:4485301‑M1/8‑63 (MQ=255) tacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGAt > 1:2142201‑M1/7‑47 (MQ=255) tacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGAt > 1:6199154‑M1/7‑47 (MQ=255) tacgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt > 1:6621423‑M1/7‑71 (MQ=255) cgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTg < 1:7309502‑M1/37‑1 (MQ=255) cgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt < 1:3187436‑M1/65‑1 (MQ=255) cgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa > 1:2981090‑M1/5‑70 (MQ=255) cgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa > 1:776504‑M1/5‑70 (MQ=255) cgcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa > 1:5069055‑M1/5‑70 (MQ=255) gcgTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa < 1:3791366‑M1/67‑1 (MQ=255) gTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATa > 1:502214‑M1/2‑43 (MQ=255) gTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt < 1:4894372‑M1/70‑1 (MQ=255) gTCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGAGCCGCTAATCt > 1:7611773‑M1/2‑71 (MQ=255) tccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc < 1:2741578/48‑1 (MQ=255) tccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt < 1:7138405/71‑1 (MQ=255) tccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt < 1:1124907/71‑1 (MQ=255) | CACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTT > W3110S.gb/69992‑70131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |