| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 77 (0.950) | 278 (4.400) +CGCGTACAACT |
79/76 | NT | 80.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 101 (1.240) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 605 total aligned reads displayed.
GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235976‑236114 | ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACaa < 1:4019106/71‑1 (MQ=255) gTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAg < 1:3879087/71‑1 (MQ=255) gTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAg < 1:4686033/71‑1 (MQ=255) acctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:1725280‑M2/67‑71 (MQ=255) ctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCt < 1:5809501‑M2/7‑1 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:1877921‑M2/63‑71 (MQ=255) acgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa < 1:6228696‑M2/9‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt < 1:1824939‑M2/5‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:7625065‑M2/13‑1 (MQ=255) ttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:1150796‑M2/57‑61 (MQ=255) ttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:644817‑M2/57‑71 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt < 1:4433458‑M2/16‑1 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt < 1:3633480‑M2/16‑1 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:5872283‑M2/55‑70 (MQ=255) tcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:2297671‑M2/52‑54 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGAc < 1:4261855/69‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:5391077‑M2/50‑52 (MQ=255) actctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt < 1:5019534‑M2/25‑1 (MQ=255) tctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTg < 1:2796321‑M2/8‑1 (MQ=255) aTCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg > 1:1936413/1‑71 (MQ=255) tactgtttctcgatacccgtttttttggacgcgtacaactCAAGTCTg < 1:6101964‑M2/8‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1397989‑M2/28‑1 (MQ=255) ctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACt > 1:6781495/1‑71 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTg > 1:5917542/1‑71 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCt < 1:7118004‑M2/23‑1 (MQ=255) ggTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGAc < 1:2184842/47‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:1437924/71‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactc < 1:1284709‑M2/1‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAg < 1:7837672‑M2/4‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:225129‑M2/34‑1 (MQ=255) aGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:5524050/1‑71 (MQ=255) tctccatacccgtttttttggacgcgtacaactCaa > 1:3689084‑M2/34‑36 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCTCTGCAAt < 1:7403302‑M2/37‑1 (MQ=255) cTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATg > 1:5272743/1‑48 (MQ=255) cTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa > 1:1658338/1‑55 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:4174102/1‑71 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:3729262‑M2/31‑60 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:6715523‑M2/31‑67 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:1062676‑M2/31‑71 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:6013001‑M2/31‑71 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac < 1:1003569‑M2/42‑1 (MQ=255) tacccgtttttttggacgcttacaactCAAGTCTGACATAAATGAcc < 1:7915609‑M2/20‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGa > 1:759609‑M2/28‑45 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGa > 1:3076672‑M2/28‑45 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:3287190‑M2/28‑71 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:6869072‑M2/28‑71 (MQ=255) acccgtttttttggacgcgtacaactCAAGTCTGACAt > 1:704658‑M2/27‑38 (MQ=255) gTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGAGCGCt > 1:1597606/1‑48 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGcc < 1:7519237‑M2/45‑1 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:1763573‑M2/25‑49 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg > 1:5576593‑M2/25‑52 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:874511‑M2/25‑68 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:3381889‑M2/47‑1 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:5216352‑M2/47‑1 (MQ=255) cgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt < 1:5775337‑M2/25‑1 (MQ=255) cgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:6262244‑M2/24‑67 (MQ=255) gtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:2959053‑M2/23‑37 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGa > 1:2758075‑M2/22‑39 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:5450678‑M2/22‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATg < 1:707835‑M2/26‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAtt < 1:2594641‑M2/38‑1 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:6401530‑M2/21‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:2408692‑M2/20‑55 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:2542267‑M2/20‑60 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:514943‑M2/51‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:2638657‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:7146292‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:419977‑M2/20‑71 (MQ=255) ttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:451221‑M2/19‑43 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct > 1:7302748‑M2/17‑71 (MQ=255) tCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct < 1:4914429/71‑1 (MQ=255) tggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa > 1:6580642‑M2/16‑54 (MQ=255) acgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc > 1:4119056‑M2/13‑69 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa > 1:566236/1‑71 (MQ=255) tGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:6953246/64‑1 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac > 1:2901811‑M2/9‑50 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCg > 1:7225299‑M2/9‑71 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCAATGCAATTACACGCCAGATCGTtct > 1:2159196‑M2/9‑63 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGc < 1:7743586‑M2/29‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:2678827‑M2/34‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:4863694‑M2/47‑1 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1558425‑M2/7‑50 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:16793‑M2/7‑50 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:4604243‑M2/7‑69 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:3814260/62‑1 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAtt > 1:2508303‑M2/6‑43 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTac > 1:7360463‑M2/6‑45 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:1194635‑M2/39‑1 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAccgca < 1:3463300‑M2/65‑3 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:4753763‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:2054788‑M2/6‑71 (MQ=255) aactCAAGTCTGACATAAATGAGCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAac < 1:4346574‑M2/67‑1 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:5488239‑M2/47‑1 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:6346785‑M2/53‑1 (MQ=255) cGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:3211281/50‑1 (MQ=255) cGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:1992221/50‑1 (MQ=255) gACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAacca > 1:3536138/1‑71 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAc > 1:5046676‑M2/3‑63 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAccgca < 1:94161‑M2/65‑3 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTAGCTACCGCAaccacc > 1:7273993/1‑71 (MQ=255) | GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235976‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |