| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 87 (1.070) | 134 (2.300) +AGGGTCCCTAAGTC |
58/70 | NT | 77.3% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 23 (0.280) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 416 total aligned reads displayed.
GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 | ggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt > 1:3635294/1‑71 (MQ=255) ccAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:2514991/69‑1 (MQ=255) ccAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg < 1:5151714‑M1/71‑4 (MQ=255) cAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg < 1:5887860/71‑1 (MQ=255) cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg < 1:6348142‑M1/71‑5 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:5787‑M1/1‑66 (MQ=255) gCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt > 1:7729586/1‑70 (MQ=255) gCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtc > 1:5695768‑M1/1‑65 (MQ=255) cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc < 1:4373916‑M1/71‑8 (MQ=255) ccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:4556441/1‑71 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:413014/1‑70 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:4884647‑M1/71‑10 (MQ=255) gagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTTAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGa < 1:6737605/71‑1 (MQ=255) gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:6265454‑M1/1‑59 (MQ=255) agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct > 1:48181‑M1/1‑56 (MQ=255) agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg < 1:2915762‑M1/59‑4 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:2299026‑M1/68‑18 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:879101‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:6675840‑M1/2‑52 (MQ=255) gTGCCGGTTGTTAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaac > 1:6205784‑M1/1‑50 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:2175596‑M1/71‑22 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:1864234‑M1/1‑50 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:5755411‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt > 1:5976781/1‑70 (MQ=255) gCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:4435205‑M1/1‑48 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGAc > 1:1979167/1‑71 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaagg < 1:733666‑M1/71‑27 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACg > 1:6839117/1‑70 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt > 1:2871257/1‑71 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagtgtccctaagt < 1:2427255‑M1/54‑14 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggc > 1:6451568‑M1/1‑41 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccag < 1:1917083‑M1/71‑32 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccag < 1:5006052‑M1/71‑32 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:2220862‑M1/1‑40 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:4952068/38‑1 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:2661450/38‑1 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct > 1:207707‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:1722324‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:1189867‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:6528278‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:1270360‑M1/1‑37 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:30151‑M1/37‑2 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:5430423/35‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:698860/35‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtcttt > 1:309108‑M1/1‑35 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:582252‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:2840847‑M1/1‑34 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:6054212‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3477030‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag > 1:7930528‑M1/1‑34 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:4278066‑M1/1‑34 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg < 1:5380362/70‑1 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:3259259‑M1/1‑33 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg > 1:2786824/1‑69 (MQ=255) aaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:814259‑M1/49‑18 (MQ=255) aaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:2152954/49‑1 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac < 1:2454951‑M1/71‑41 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:749670‑M1/1‑31 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:3743915‑M1/39‑10 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactg < 1:2968076‑M1/71‑43 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaac < 1:4234660‑M1/49‑21 (MQ=255) atgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagc < 1:5609451‑M1/71‑46 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:4771529‑M1/1‑25 (MQ=255) tgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:7782788‑M1/1‑22 (MQ=255) gTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:7636817‑M1/1‑21 (MQ=255) gTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:5506703/1‑40 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa < 1:3823463‑M1/43‑24 (MQ=255) aGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:6799887‑M1/1‑19 (MQ=255) gCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtt > 1:314755‑M1/1‑18 (MQ=255) gCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:1833686‑M1/1‑18 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:6079506/71‑1 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag > 1:509440‑M1/1‑15 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag > 1:7090980‑M1/1‑15 (MQ=255) gTCAAGTTGTCATAAagggtccctaagcctaaaacgaaaggcccagtctttcgactgagcctttcgtttta < 1:2349094‑M1/71‑57 (MQ=255) gTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAAt < 1:2641999/71‑1 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactga < 1:461524‑M1/57‑44 (MQ=255) cAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtcttt < 1:3961638‑M1/49‑37 (MQ=255) cAAGTTGTCATAAagggtccctaagtctaaaacgaaaggc > 1:3557039‑M1/1‑13 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:3893071‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatt > 1:7841602‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:6898514‑M1/1‑12 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc > 1:7275950/1‑39 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCa > 1:1453404/1‑64 (MQ=255) gTTGTCATAAagggtccctaagtctaaaacgaaaggccca > 1:3397097‑M1/1‑10 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgccc > 1:3329494‑M1/1‑8 (MQ=255) tGTCATAATTGGTAACGAATCAGACAATTGACGGCtt < 1:1624878/37‑1 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCt < 1:718854/70‑1 (MQ=255) tCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGttt < 1:4493158/55‑1 (MQ=255) cATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAg > 1:6490549/1‑44 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttt < 1:1391600‑M1/58‑55 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATc > 1:7437403/1‑61 (MQ=255) tAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:5274678‑M1/40‑38 (MQ=255) tAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3613581‑M1/40‑38 (MQ=255) tAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAgg < 1:3676971/48‑1 (MQ=255) aaagggtccctaagtctaaaacgaaaggcccagtctttcgactga > 1:1056791‑M1/1‑2 (MQ=255) aaagggtccctaagtctaaaacgaaaggcccagtctttc > 1:5480393‑M1/1‑2 (MQ=255) aaTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTc < 1:6227943/70‑1 (MQ=255) aagggtccctaagtctaaaacgaaaggcccagtctttc > 1:5239964‑M1/1‑1 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTcc < 1:6931301/70‑1 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTcc < 1:6631796/70‑1 (MQ=255) | GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |