| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 87 (1.070) | 134 (2.300) +AGGGTCCCTAAGTC |
58/70 | NT | 77.3% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 23 (0.280) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 219 total aligned reads displayed.
TCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCC > W3110S.gb/3464810‑3464939 | gttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:2565704‑M2/2‑1 (MQ=255)gttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:6211105‑M2/2‑1 (MQ=255) ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:2264479‑M2/69‑70 (MQ=255) ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:5505670‑M2/2‑1 (MQ=255) cgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc < 1:2163456‑M2/6‑1 (MQ=255) gtgccggttgttaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc > 1:6205784‑M2/65‑70 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:1864234‑M2/65‑69 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc > 1:6693294‑M2/65‑70 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:4120199‑M2/7‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:2175596‑M2/7‑1 (MQ=255) ttccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:3767658‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg > 1:6574523‑M2/64‑70 (MQ=255) gccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:4435205‑M2/63‑70 (MQ=255) ggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg < 1:733666‑M2/12‑1 (MQ=255) ggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg > 1:1203351‑M2/60‑71 (MQ=255) ggatgtgaagaaaaagtgaatgatctagccgtcaagttgtcataaagggtccctaagtcTaa > 1:6339794‑M2/60‑62 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2347482‑M2/8‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAg > 1:236521‑M2/58‑68 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:7672259‑M2/14‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:4842549‑M2/14‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:1405191‑M2/14‑1 (MQ=255) tgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:3718340‑M2/57‑70 (MQ=255) tgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAg < 1:5006052‑M2/17‑1 (MQ=255) tgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAg < 1:1917083‑M2/17‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAATGAAAGGCCCAGt < 1:3289285‑M2/18‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGTCCCAGTc < 1:1240841‑M2/19‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGt < 1:5483568‑M2/18‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:6984039‑M2/53‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa > 1:834908‑M2/52‑55 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTATAACGaaa < 1:5336276‑M2/10‑1 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGc > 1:4766957‑M2/52‑64 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:7554314‑M2/52‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:207707‑M2/52‑71 (MQ=255) gaaaaagtgaattatgtagccgtcaatttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:3932494‑M2/21‑1 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:4826156‑M2/21‑1 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt > 1:5169112‑M2/51‑71 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt > 1:7425093‑M2/51‑71 (MQ=255) aaaaagtgaatgatgtagtcgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt > 1:789226‑M2/50‑70 (MQ=255) aaaaagtgaatgatgtagcggtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCTCAgtcga < 1:6451409‑M2/21‑3 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:720146‑M2/3‑1 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCttt > 1:309108‑M2/50‑71 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt > 1:4571673‑M2/50‑70 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:2815087‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:3477030‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:472871‑M2/49‑71 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:5821798‑M2/48‑52 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:4179434‑M2/3‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:6728044‑M2/48‑70 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:507680‑M2/48‑70 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:775001‑M2/47‑51 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:814259‑M2/3‑1 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:6028133‑M2/47‑48 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg > 1:3326402‑M2/47‑70 (MQ=255) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc < 1:2454951‑M2/26‑1 (MQ=255) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc < 1:2863913‑M2/26‑1 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc < 1:4234660‑M2/6‑1 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc < 1:6823798‑M2/6‑1 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:2968076‑M2/28‑1 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:934066‑M2/8‑1 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:4478837‑M2/42‑49 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:6230786‑M2/30‑1 (MQ=255) atgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc < 1:5609451‑M2/31‑1 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:5268068‑M2/23‑1 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:4255518‑M2/20‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:6073613‑M2/33‑1 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt < 1:2311662‑M2/35‑1 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:3823463‑M2/9‑1 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:3874262‑M2/34‑43 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg < 1:3349281‑M2/37‑1 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:1833686‑M2/33‑40 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAg > 1:595183‑M2/33‑43 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGGCTTTCGACTGAGCCtt < 1:112872‑M2/34‑1 (MQ=255) cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:3384247/1‑61 (MQ=35) gtcaagttgtcataaagggtccctaagtcTAAAACGAAAg > 1:7090980‑M2/30‑40 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACg < 1:677201‑M2/7‑1 (MQ=255) caagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt < 1:3664588‑M2/44‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:2095100‑M2/27‑57 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt > 1:7841602‑M2/27‑70 (MQ=255) agttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg > 1:1716629‑M2/26‑49 (MQ=255) agttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:2061242‑M2/26‑70 (MQ=255) agttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:1608947‑M2/26‑70 (MQ=255) gttgtcataaagggtccttaagtcTAAAACGAAAGGCCCa > 1:5719900‑M2/25‑40 (MQ=255) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:3397097‑M2/25‑40 (MQ=255) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:5825690‑M2/23‑1 (MQ=255) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:2253082‑M2/23‑1 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg > 1:2996750‑M2/24‑60 (MQ=255) agCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg < 1:6915867/60‑1 (MQ=35) gtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:2439504‑M2/22‑37 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt < 1:510732‑M2/34‑1 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg > 1:4409756‑M2/22‑68 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:2741831‑M2/40‑1 (MQ=255) cataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:1455008‑M2/20‑38 (MQ=255) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:3613581‑M2/23‑1 (MQ=255) cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:1047130/1‑60 (MQ=35) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg < 1:6657109/70‑1 (MQ=35) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:4366611‑M2/16‑38 (MQ=255) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:5239964‑M2/16‑38 (MQ=255) gggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:695230‑M2/28‑1 (MQ=255) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTcc > 1:4026627/1‑71 (MQ=34) agtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:4663925‑M2/5‑35 (MQ=255) | TCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCC > W3110S.gb/3464810‑3464939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |