| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 635883 | 66 (0.810) | 6 (0.080) | 3/94 | NT | 7.8% | intergenic (‑91/+56) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | = 635900 | 78 (1.000) | intergenic (‑108/+39) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator | |||||
TTACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCAT > W3110S.gb/635813‑635952 | ttACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTT < 1:7348468‑M1/71‑1 (MQ=255)ttACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTT > 1:3357919‑M1/1‑71 (MQ=255) aCAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCa > 1:6295809/1‑71 (MQ=255) ggTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTcg < 1:7292515/71‑1 (MQ=255) ggTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAAAACTGTAAAGCAGAGTGTTTTATTTTT < 1:1014565‑M1/65‑1 (MQ=255) gTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTcgc < 1:7849694/71‑1 (MQ=255) gTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTcgc < 1:160303/71‑1 (MQ=255) aTCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTcgcg < 1:6478287/69‑1 (MQ=255) aTCAGCGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCt < 1:1242332/71‑1 (MQ=255) cAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTcgcg < 1:5379298/67‑1 (MQ=255) cAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCtgt > 1:4499205/1‑71 (MQ=255) cAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCtgt > 1:1861421/1‑71 (MQ=255) aGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCtgt < 1:7453811/70‑1 (MQ=255) tGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaa > 1:3565234/1‑71 (MQ=255) agaTAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaat < 1:1323261/70‑1 (MQ=255) agaTAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaat > 1:2549879/1‑70 (MQ=255) aTAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAaa < 1:2886198‑M2/71‑3 (MQ=255) tAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaataaat < 1:663454/71‑1 (MQ=255) aGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTtattcacagcgcgaatgaaaaa < 1:1877362‑M1/71‑23 (MQ=255) aGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTtattcacagcgcgaatgaaaaa < 1:686456‑M1/71‑23 (MQ=255) gTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAaa < 1:6157479‑M2/67‑3 (MQ=255) tCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGAt < 1:7369779/71‑1 (MQ=255) tGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTc > 1:4926174/1‑50 (MQ=255) ttAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATg < 1:5132095/68‑1 (MQ=255) aaTTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAg < 1:2982239/70‑1 (MQ=255) aTTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGtt < 1:2688229/71‑1 (MQ=255) aTTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGtt < 1:1726358/71‑1 (MQ=255) aTTAT‑AAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta > 1:1659033/1‑71 (MQ=255) ttATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta < 1:1458725/71‑1 (MQ=255) taAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTtata < 1:3531705/70‑1 (MQ=255) taAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTtat < 1:6558984/69‑1 (MQ=255) aaaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:1356675/1‑70 (MQ=255) aaaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:686705/1‑70 (MQ=255) aaaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:6313896/1‑70 (MQ=255) aaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaa > 1:5656759/1‑49 (MQ=255) aaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGa < 1:7569167/60‑1 (MQ=255) aaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta < 1:943897/71‑1 (MQ=255) aGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagtag < 1:5990065/71‑1 (MQ=255) aaaCACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaa > 1:4363622/1‑45 (MQ=255) aaaCACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaa < 1:5801404/45‑1 (MQ=255) aaaCACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaa < 1:3786616/45‑1 (MQ=255) aaCACTGTAAAGCAGAGTGTTTTATTTTTtattcacagcgcgaatgaa < 1:2936270‑M1/48‑20 (MQ=255) aaCACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta < 1:6765112/61‑1 (MQ=255) aaCACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta < 1:3553052/61‑1 (MQ=255) acacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtc < 1:6613347/71‑1 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTtattcacagcgcg > 1:566621‑M1/1‑27 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTtattcacagcgcg > 1:4595322‑M1/1‑27 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTtattcacagcgcg > 1:4745102‑M1/1‑27 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:3862622/1‑71 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:3683722/1‑71 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTCAATAAATAGATGAAAGTTATAGTAGctgtct > 1:4583959/1‑71 (MQ=255) tGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCtgtg < 1:7862985/37‑1 (MQ=255) tGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCtgtg < 1:3890957/37‑1 (MQ=255) tGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagt > 1:6684862/1‑60 (MQ=255) gTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAg > 1:7180889/1‑71 (MQ=255) tAAAGCAGAGTTTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGt > 1:3748599/1‑71 (MQ=255) tAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATATATGAAAGTTATAGTAGCTGTCTGTAg < 1:1657276/70‑1 (MQ=255) tAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAg < 1:479511/70‑1 (MQ=255) aaaGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGt > 1:2660492/1‑70 (MQ=255) aaGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAa > 1:894911‑M2/1‑37 (MQ=255) aaGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGtt < 1:432335/70‑1 (MQ=255) aGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta > 1:2404196/1‑70 (MQ=255) aGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta > 1:4291882/1‑70 (MQ=255) aGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta > 1:178843/1‑70 (MQ=255) gCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:7316253/1‑53 (MQ=255) gCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta < 1:7588753/69‑1 (MQ=255) gCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta < 1:2413846/69‑1 (MQ=255) cAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta > 1:1037446/1‑49 (MQ=255) cAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta > 1:3829478/1‑49 (MQ=255) gagTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTtatata > 1:7581541/1‑70 (MQ=255) agTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATc < 1:1493554/71‑1 (MQ=255) agTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATc < 1:3828833/71‑1 (MQ=255) tgtTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGc < 1:6808898/51‑1 (MQ=255) ttttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaaa < 1:4052739/71‑1 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGt > 1:4574504/1‑38 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta > 1:2382659/1‑45 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:3788704/1‑52 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:2949075/1‑52 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaaaa < 1:6883014/70‑1 (MQ=255) aTTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAAct > 1:1879155/1‑70 (MQ=255) tttttCATTCGCGCTGTGAATAaaaaataaaacactctgctttacagtgtttactttataattaacagact < 1:686456‑M2/71‑50 (MQ=255) tttttCATTCGCGCTGTGAATAaaaaataaaacactctgctttacagtgtttactttataattaacagact < 1:1877362‑M2/71‑50 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagtag > 1:1336387/1‑42 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagtag > 1:4607934/1‑42 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta > 1:995237/1‑41 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta > 1:2674088/1‑41 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTATctgtctgt < 1:5332655/49‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtctgt < 1:4152585/49‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAActct < 1:7438578/69‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAActct < 1:511596/69‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAActct < 1:512330/69‑1 (MQ=255) tttattcacagcgcgaatgaaaaataaaacactctgctttacagtgtttactttataattaacagacttat < 1:2886198‑M1/71‑70 (MQ=255) tttattcacagcgcgaatgaaaaataaaacactctgctttacagtgtttactttataattaacagac < 1:6157479‑M1/67‑66 (MQ=255) ttCATTCGCGCTGTGAATAaaaaataaaacactctgctttacagtgtt < 1:2936270‑M2/48‑30 (MQ=255) ttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCa < 1:4786985/70‑1 (MQ=255) ttattcacagcgcgaatgaaaaataaaacactctgctt > 1:894911‑M1/1‑1 (MQ=255) | TTACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCAT > W3110S.gb/635813‑635952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |