| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 635883 | 66 (0.810) | 6 (0.080) | 3/94 | NT | 7.8% | intergenic (‑91/+56) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | = 635900 | 78 (1.000) | intergenic (‑108/+39) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator | |||||
ATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCAATAA > W3110S.gb/635832‑635967 | aTAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAaa < 1:2886198‑M2/71‑3 (MQ=255) tAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGaataaat < 1:663454/71‑1 (MQ=255) gTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAaa < 1:6157479‑M2/67‑3 (MQ=255) tCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGAt < 1:7369779/71‑1 (MQ=255) ttAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATg < 1:5132095/68‑1 (MQ=255) aaTTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAg < 1:2982239/70‑1 (MQ=255) aTTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGtt < 1:1726358/71‑1 (MQ=255) aTTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGtt < 1:2688229/71‑1 (MQ=255) aTTAT‑AAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta > 1:1659033/1‑71 (MQ=255) ttATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta < 1:1458725/71‑1 (MQ=255) taAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTtata < 1:3531705/70‑1 (MQ=255) taAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTtat < 1:6558984/69‑1 (MQ=255) aaaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:686705/1‑70 (MQ=255) aaaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:6313896/1‑70 (MQ=255) aaaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:1356675/1‑70 (MQ=255) aaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGa < 1:7569167/60‑1 (MQ=255) aaGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta < 1:943897/71‑1 (MQ=255) aGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagtag < 1:5990065/71‑1 (MQ=255) aaCACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta < 1:3553052/61‑1 (MQ=255) aaCACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta < 1:6765112/61‑1 (MQ=255) acacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtc < 1:6613347/71‑1 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:3683722/1‑71 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:3862622/1‑71 (MQ=255) cacTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTCAATAAATAGATGAAAGTTATAGTAGctgtct > 1:4583959/1‑71 (MQ=255) tGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagt > 1:6684862/1‑60 (MQ=255) gTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAg > 1:7180889/1‑71 (MQ=255) tAAAGCAGAGTTTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGt > 1:3748599/1‑71 (MQ=255) tAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATATATGAAAGTTATAGTAGCTGTCTGTAg < 1:1657276/70‑1 (MQ=255) tAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAg < 1:479511/70‑1 (MQ=255) aaaGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGt > 1:2660492/1‑70 (MQ=255) aaGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAa > 1:894911‑M2/1‑37 (MQ=255) aaGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGtt < 1:432335/70‑1 (MQ=255) aGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta > 1:2404196/1‑70 (MQ=255) aGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta > 1:178843/1‑70 (MQ=255) aGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta > 1:4291882/1‑70 (MQ=255) gCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtag > 1:7316253/1‑53 (MQ=255) gCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta < 1:2413846/69‑1 (MQ=255) gCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTta < 1:7588753/69‑1 (MQ=255) cAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta > 1:1037446/1‑49 (MQ=255) cAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTta > 1:3829478/1‑49 (MQ=255) gagTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTtatata > 1:7581541/1‑70 (MQ=255) agTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATc < 1:3828833/71‑1 (MQ=255) agTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATc < 1:1493554/71‑1 (MQ=255) tgtTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGc < 1:6808898/51‑1 (MQ=255) ttttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaaa < 1:4052739/71‑1 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGt > 1:4574504/1‑38 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta > 1:2382659/1‑45 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:3788704/1‑52 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtct > 1:2949075/1‑52 (MQ=255) ttATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaaaa < 1:6883014/70‑1 (MQ=255) aTTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAAct > 1:1879155/1‑70 (MQ=255) tttttCATTCGCGCTGTGAATAaaaaataaaacactctgctttacagtgtttactttataattaacagact < 1:686456‑M2/71‑50 (MQ=255) tttttCATTCGCGCTGTGAATAaaaaataaaacactctgctttacagtgtttactttataattaacagact < 1:1877362‑M2/71‑50 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagtag > 1:4607934/1‑42 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagtag > 1:1336387/1‑42 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta > 1:2674088/1‑41 (MQ=255) ttttCATTCGCGCTGTGAATAAATAGATGAAAGTTAtagta > 1:995237/1‑41 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTATctgtctgt < 1:5332655/49‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGctgtctgt < 1:4152585/49‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAActct < 1:7438578/69‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAActct < 1:511596/69‑1 (MQ=255) tttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAActct < 1:512330/69‑1 (MQ=255) ttCATTCGCGCTGTGAATAaaaaataaaacactctgctttacagtgtt < 1:2936270‑M2/48‑30 (MQ=255) ttCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCa < 1:4786985/70‑1 (MQ=255) aTTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTa < 1:5221721/71‑1 (MQ=255) aTTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTGATATATCAAAAACTCTCAtt > 1:2367582/1‑69 (MQ=255) tCGCGCTGTGAATAAATAGATGAAAGTTAtagtag > 1:428025/1‑35 (MQ=255) tCGCGCTGTGAATAAATAGATGAAAGTTAtagtag > 1:3425766/1‑35 (MQ=255) tCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaa > 1:5986767/1‑57 (MQ=255) cgcgCTGTGAATAaaaaataaaacactctgctttacagtg > 1:566621‑M2/1‑13 (MQ=255) cgcgCTGTGAATAaaaaataaaacactctgctttacagtg > 1:4745102‑M2/1‑13 (MQ=255) cgcgCTGTGAATAaaaaataaaacactctgctttacagtg > 1:4595322‑M2/1‑13 (MQ=255) cgcgCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTTTAGTTATATATCaaa < 1:323413/56‑1 (MQ=255) cgcgCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAg < 1:506761/44‑1 (MQ=255) cgcgCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAg < 1:4303965/44‑1 (MQ=255) cgcgCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAg < 1:3976228/44‑1 (MQ=255) cgcgCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaa < 1:2478014/56‑1 (MQ=255) gcgcTGTGAATAAATAGATGAAAGTTATAGTAGctgtc > 1:2620951/1‑38 (MQ=255) gcgcTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACg < 1:4816050/71‑1 (MQ=255) cgcTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGtt > 1:19942/1‑44 (MQ=255) cgcTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGtt > 1:2627759/1‑44 (MQ=255) cgcTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGtt > 1:2832275/1‑44 (MQ=255) cgcTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGtt > 1:6894339/1‑44 (MQ=255) tgtgAATAAATAGATGAAAGTTATAGTAGctgtct < 1:4539434/35‑1 (MQ=255) tgtgAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaa < 1:1298215/51‑1 (MQ=255) tgAATAAATATATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaa < 1:722367/49‑1 (MQ=255) tgAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCaa > 1:2708005/1‑70 (MQ=255) tgAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCa < 1:3352129/69‑1 (MQ=255) tgAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCa < 1:7752140/69‑1 (MQ=255) gAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCAAt > 1:2350192/1‑70 (MQ=255) aataaataGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCa > 1:4220343/1‑45 (MQ=255) aataaataGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCAATaa < 1:573834/71‑1 (MQ=255) ataaataGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAActct < 1:1196836/52‑1 (MQ=255) ataaataGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCAATaa < 1:5870827/70‑1 (MQ=255) taaataGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCaaaaa > 1:3815772/1‑47 (MQ=255) | ATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTCATTCGCGCTGTGAATAAATAGATGAAAGTTATAGTAGCTGTCTGTAGTTATATATCAAAAACTCTCATTTAGACGGTCAATAA > W3110S.gb/635832‑635967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |