| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2488824 = | 98 (1.200) | 5 (0.070) | 3/84 | NT | 5.8% | intergenic (‑39/‑377) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS |
| ? | W3110S.gb | 2488845 = | 79 (1.130) | intergenic (‑60/‑356) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS | |||||
Only 100 of 132 total aligned reads displayed.
GAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGG > W3110S.gb/2488754‑2488893 | gAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattg < 1:4395079/71‑1 (MQ=255)gAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattg < 1:422862/71‑1 (MQ=255) acctcatttaaattaggcctccaacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaag < 1:125274‑M1/1‑1 (MQ=255) tcatttaaattaggcctccaacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAAt < 1:540587‑M1/4‑1 (MQ=255) tcatttaaattaggcctccaacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAAt < 1:5306979‑M1/4‑1 (MQ=255) tcatttaaattaggcctccaacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAAt < 1:6468611‑M1/4‑1 (MQ=255) tttttATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattg < 1:7181504/65‑1 (MQ=255) atttaaattaggcctccaacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAATg > 1:2252413‑M1/65‑69 (MQ=255) atttaaattaggcctccaacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAATGaa > 1:56648‑M1/65‑71 (MQ=255) tttATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAAtt‑aatgaa < 1:3042246/68‑1 (MQ=255) tttATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAAtt‑aatgaa < 1:3051361/68‑1 (MQ=255) tttATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATtgaatgaa < 1:5847212/69‑1 (MQ=255) tttATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATtgaatgaa < 1:5283084/69‑1 (MQ=255) tttATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATtgaatgaa < 1:4421563/69‑1 (MQ=255) tttATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGaaa < 1:4747196/70‑1 (MQ=255) ttGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattga < 1:6354263/59‑1 (MQ=255) ttGAATTAATCTGTTCCACCATTATCTCTCATTTCTCATAGATGAAATTTAtgaattga < 1:7817349/59‑1 (MQ=255) tGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcat > 1:1072547/1‑71 (MQ=255) tGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcat > 1:1522460/1‑71 (MQ=255) aaTTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAag > 1:7164869/1‑64 (MQ=255) aaTTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcatt > 1:7018587/1‑70 (MQ=255) aTTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattca > 1:5919566/1‑71 (MQ=255) aTTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattca > 1:6324073/1‑71 (MQ=255) ttAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattcat < 1:1262386/71‑1 (MQ=255) aTCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttct < 1:1371715/71‑1 (MQ=255) caacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAATGa < 1:543695‑M1/6‑1 (MQ=255) caacgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAATGa < 1:7270427‑M1/6‑1 (MQ=255) aacgttcctgggataatgtgcaaaacatgcactgtctttgatatgaaGAATGa < 1:6055136‑M1/6‑1 (MQ=255) acgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAATGAAAAGAGCATTCAttct > 1:3655951‑M1/47‑68 (MQ=255) ttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAATGa < 1:6563405‑M1/6‑1 (MQ=255) cACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATc < 1:2526953/70‑1 (MQ=255) cACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATc < 1:1148113/70‑1 (MQ=255) cTATTATCTCTCATTTCTCATAGATGAAATTTATTAATTGAATGAAAAGAGCATTCAttct < 1:1750206/61‑1 (MQ=255) cTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcat < 1:4328740/54‑1 (MQ=255) tattatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 1:209090/62‑1 (MQ=255) gggataatgtgcaacacatgcactgtgtttgatatgaaga < 1:894854‑M1/2‑1 (MQ=255) attatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca > 1:1304983/1‑71 (MQ=255) ttatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATTAAAAGAGcattcatt > 1:6044067/1‑56 (MQ=255) ttatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattcatt > 1:6084072/1‑56 (MQ=255) ttatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCattcattc > 1:5268052/1‑57 (MQ=255) ttatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:1212468/70‑1 (MQ=255) tatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttct < 1:7482218/57‑1 (MQ=255) tatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:6416106/69‑1 (MQ=255) atCTCTCATTTCTCATAGATGAAATTTAtgaattgaa > 1:6931006/1‑37 (MQ=255) tctcATTTCTCATAGATGAAATTTATGAATtgaatgaa < 1:5807891/38‑1 (MQ=255) ctcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCa < 1:4175137/60‑1 (MQ=255) tcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAacac > 1:4115950/1‑64 (MQ=255) tcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCAt > 1:2654735/1‑71 (MQ=255) gcaacacatgcactgtgtttgatatgaaGAATGAAAAGAGCattcattc > 1:4006978‑M1/29‑49 (MQ=255) cATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCAtg > 1:2448864/1‑71 (MQ=255) ttCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt > 1:2058277/1‑71 (MQ=255) acacatgcactgtgtttgatatgaaGAATGAAAAGAGCATTCAttct < 1:3443436‑M1/22‑1 (MQ=255) acacatgcactgtgtttgatatgaaGAATGAAAAGAGCATTCAttct < 1:7319497‑M1/22‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGca < 1:6970040/38‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCata < 1:7220101/51‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt < 1:6654530/70‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt < 1:3410209/70‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt > 1:1007864/1‑71 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt > 1:1063151/1‑71 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt > 1:3617650/1‑71 (MQ=255) ctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCat > 1:7693955/1‑49 (MQ=255) ctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCAtgt > 1:4919305/1‑67 (MQ=255) ctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt < 1:7721702/69‑1 (MQ=255) aTAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAg > 1:7253739/1‑57 (MQ=255) aTAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGcac < 1:3173288/71‑1 (MQ=255) aTAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGc < 1:3106507/69‑1 (MQ=255) gATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTg > 1:518449/1‑65 (MQ=255) gATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACAtt < 1:5444584/71‑1 (MQ=255) gATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACAt > 1:5113014/1‑70 (MQ=255) aTGAAATTTATGAATTGAATGAAAAGAGCATTCAttctt < 1:1152276/39‑1 (MQ=255) aTGAAATTTATGAATTGAATGAAAAGAGCATTCAttctt < 1:4759161/39‑1 (MQ=255) aTGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTa < 1:7301353/71‑1 (MQ=255) tGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTAt > 1:5366329/1‑71 (MQ=255) tGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTAt > 1:7353340/1‑71 (MQ=255) gAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:2278914/48‑1 (MQ=255) gAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:5140906/48‑1 (MQ=255) gAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACAAAGTGCATGTGTTGCACATTATc > 1:1391166/1‑71 (MQ=255) aaaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGc < 1:5370274/62‑1 (MQ=255) aaaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATc < 1:2888341/70‑1 (MQ=255) aaTTTATGAATTGAATGAAACGAGCATTCATTCTTCata > 1:2613615/1‑39 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCata < 1:831885/39‑1 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCata < 1:923707/39‑1 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCata > 1:5964446/1‑39 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCata < 1:2967630/39‑1 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATcc > 1:6744246/1‑70 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATcc > 1:2448595/1‑70 (MQ=255) aTTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCa < 1:2299999/71‑1 (MQ=255) ttATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt > 1:2134242/1‑56 (MQ=255) tATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAAcaca > 1:5920612/1‑44 (MQ=255) aTGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGa < 1:6161978/70‑1 (MQ=255) aTGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGa < 1:2694868/70‑1 (MQ=255) attgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAgg < 1:6767326/65‑1 (MQ=255) attgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAAc < 1:1040405/68‑1 (MQ=255) attgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAAc < 1:6428723/68‑1 (MQ=255) ttgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg < 1:1972657/71‑1 (MQ=255) ttgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg < 1:1771427/71‑1 (MQ=255) tgaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGt > 1:2765916/1‑68 (MQ=255) tgaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg > 1:4535641/1‑70 (MQ=255) tgaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg > 1:5728011/1‑70 (MQ=255) GAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTgg > 1:2586325‑M1/1‑70 (MQ=255) | GAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGG > W3110S.gb/2488754‑2488893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |