| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2488824 = | 98 (1.200) | 5 (0.070) | 3/84 | NT | 5.8% | intergenic (‑39/‑377) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS |
| ? | W3110S.gb | 2488845 = | 79 (1.130) | intergenic (‑60/‑356) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS | |||||
Only 100 of 142 total aligned reads displayed.
ATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGT > W3110S.gb/2488775‑2488913 | aTCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttct < 1:1371715/71‑1 (MQ=255) tGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCa > 1:4789790/1‑71 (MQ=255) acgttcctgggataatgtgcaacacatgcactgtgtttgatatgaaGAATGAAAAGAGCATTCAttct > 1:3655951‑M1/47‑68 (MQ=255) cACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATc < 1:1148113/70‑1 (MQ=255) cACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCa < 1:58548/71‑1 (MQ=255) tattatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 1:209090/62‑1 (MQ=255) attatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca > 1:1304983/1‑71 (MQ=255) ttatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:1212468/70‑1 (MQ=255) tatCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:6416106/69‑1 (MQ=255) atCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAg > 1:2983863/1‑71 (MQ=255) ctctcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCa < 1:3450325/62‑1 (MQ=255) ctctcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTg > 1:5972193/1‑71 (MQ=255) ctcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCa < 1:4175137/60‑1 (MQ=255) tcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAacac > 1:4115950/1‑64 (MQ=255) tcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTg < 1:6158312/68‑1 (MQ=255) tcATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCAt > 1:2654735/1‑71 (MQ=255) cATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCAtg > 1:7157441/1‑71 (MQ=255) cATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCAtg > 1:2448864/1‑71 (MQ=255) tttCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCa > 1:1342396/1‑67 (MQ=255) ttCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt > 1:2058277/1‑71 (MQ=255) acacatgcactgtgtttgatatgaaGAATGAAAAGAGCATTCAttct < 1:3443436‑M1/22‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCata < 1:7220101/51‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt < 1:3410209/70‑1 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt > 1:1063151/1‑71 (MQ=255) tctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt > 1:1007864/1‑71 (MQ=255) ctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCat > 1:2414341/1‑49 (MQ=255) ctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCat > 1:7693955/1‑49 (MQ=255) ctcATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt < 1:7721702/69‑1 (MQ=255) aTAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGcac < 1:3173288/71‑1 (MQ=255) aTAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGca > 1:4477272/1‑70 (MQ=255) aTAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGc < 1:3106507/69‑1 (MQ=255) gATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTg > 1:518449/1‑65 (MQ=255) gATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACAt > 1:5113014/1‑70 (MQ=255) aTGAAATTTATGAATTGAATGAAAAGAGCATTCAttctt < 1:4759161/39‑1 (MQ=255) aTGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTa > 1:2569661/1‑71 (MQ=255) aTGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTa < 1:7301353/71‑1 (MQ=255) tGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTAt > 1:5366329/1‑71 (MQ=255) tGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTAt > 1:7353340/1‑71 (MQ=255) gAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:2278914/48‑1 (MQ=255) gAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:5140906/48‑1 (MQ=255) gAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATc > 1:1722814/1‑71 (MQ=255) aaaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATc < 1:2888341/70‑1 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCata < 1:923707/39‑1 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCata > 1:5964446/1‑39 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCata < 1:831885/39‑1 (MQ=255) aaTTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATcc > 1:6744246/1‑70 (MQ=255) ttATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt > 1:2134242/1‑56 (MQ=255) ttATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGca > 1:5350902/1‑59 (MQ=255) ttATGAATTGAATGAAAAGAGCATTCATTATTCATATCAAACACAGTGCATGTGTTGca > 1:7305993/1‑59 (MQ=255) aTGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGa < 1:6161978/70‑1 (MQ=255) aTGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGa < 1:2694868/70‑1 (MQ=255) attgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAgg < 1:6767326/65‑1 (MQ=255) attgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAAc < 1:6428723/68‑1 (MQ=255) attgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAAc < 1:1040405/68‑1 (MQ=255) ttgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg < 1:1771427/71‑1 (MQ=255) ttgaatGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg < 1:1972657/71‑1 (MQ=255) tgaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGt > 1:2765916/1‑68 (MQ=255) tgaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg > 1:4535641/1‑70 (MQ=255) tgaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg > 1:5728011/1‑70 (MQ=255) agaatgaatgctcttttcattcTTCATATCAAACACAGTGCATgtgt < 1:7319497‑M2/25‑1 (MQ=255) agaatgaatgctcttttcattcTTCATATCAAACACAGTGCATgtgt < 1:1985701‑M2/25‑1 (MQ=255) agaatgaatgctcttttcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGt > 1:3655951‑M2/23‑68 (MQ=255) gaatgaatgctcttttcattcTTCATATCAAACACAGTGCATGTGTTGc > 1:4006978‑M2/22‑49 (MQ=255) GAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTgg > 1:2586325‑M1/1‑70 (MQ=255) AATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAg > 1:4554298‑M1/1‑71 (MQ=255) ATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAgg < 1:954395‑M1/71‑1 (MQ=255) ATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAgg < 1:5571402‑M1/71‑1 (MQ=255) TGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg > 1:3203150‑M1/1‑66 (MQ=255) GAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGa < 1:2383792‑M1/59‑1 (MQ=255) GAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGtt > 1:6552282‑M1/1‑64 (MQ=255) GAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGa < 1:3255218‑M1/67‑1 (MQ=255) GAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGcc < 1:5588308‑M1/71‑1 (MQ=255) AAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACAt < 1:574515‑M1/48‑1 (MQ=255) AAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACAt < 1:5258403‑M1/48‑1 (MQ=255) AAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg > 1:7789258‑M1/1‑63 (MQ=255) AAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg > 1:2481942‑M1/1‑63 (MQ=255) AAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAgg < 1:7552466‑M1/67‑1 (MQ=255) AAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCt < 1:183010‑M1/70‑1 (MQ=255) AAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTa > 1:858176‑M1/1‑71 (MQ=255) AAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTa > 1:5209797‑M1/1‑71 (MQ=255) aaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGa > 1:3855005/1‑64 (MQ=255) aaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGa > 1:2124483/1‑64 (MQ=255) aaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGa > 1:6902754/1‑64 (MQ=255) aaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 1:250614/1‑71 (MQ=255) aaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 1:6273618/1‑71 (MQ=255) aaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 1:111325/1‑71 (MQ=255) agagCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGt > 1:7016034/1‑59 (MQ=255) gagCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATc > 1:1648202/1‑48 (MQ=255) gagCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAAtt > 1:6992799/1‑71 (MQ=255) gagCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAAtt > 1:7516791/1‑71 (MQ=255) gagCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAAtt > 1:3591089/1‑71 (MQ=255) gCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTa < 1:3955144/71‑1 (MQ=255) attcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGaa < 1:2836025/51‑1 (MQ=255) tcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGaa < 1:6563405‑M2/43‑1 (MQ=255) tcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGaa < 1:541694‑M2/43‑1 (MQ=255) tcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg < 1:7270427‑M2/48‑1 (MQ=255) tcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTg < 1:543695‑M2/48‑1 (MQ=255) cattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAAt > 1:2252413‑M2/6‑69 (MQ=255) attcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGa < 1:540587‑M2/66‑1 (MQ=255) cTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGt < 1:125274‑M2/69‑1 (MQ=255) | ATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGT > W3110S.gb/2488775‑2488913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |