| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4460585 = | 143 (1.760) | 9 (0.120) | 5/90 | NT | 6.8% | coding (119/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | W3110S.gb | 4460604 = | 116 (1.550) | coding (138/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
Only 100 of 180 total aligned reads displayed.
GCGATGCTGGCGCGCCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGCCGGAT > W3110S.gb/4460515‑4460655 | gCGATGCTGGCGCGCCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCAc > 1:5621284/1‑71 (MQ=255) ttgacaataatcaccagatccggctgcggctcgagctggctggcatcgtacccctgaatcagctcaatgcc > 1:1828941‑M1/70‑71 (MQ=255) cGATGCTGGCGCGCCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCAcc < 1:246716/71‑1 (MQ=255) cGATGCTGGCGCGCCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCAc > 1:755304/1‑70 (MQ=255) tGCTGGCGCGCCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTa > 1:6508578/1‑71 (MQ=255) gcgcgcCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACtt > 1:6313309/1‑69 (MQ=255) gcgcgcCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTga < 1:325663/71‑1 (MQ=255) gcgcgcCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTga < 1:6999419/71‑1 (MQ=255) cgcCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTgag > 1:3444645/1‑69 (MQ=255) cgcCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTgag > 1:6216326/1‑69 (MQ=255) cgcCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTgag > 1:202724/1‑69 (MQ=255) ccAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGc < 1:3539606/71‑1 (MQ=255) ccAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGc < 1:3829421/71‑1 (MQ=255) ccAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGc < 1:6337004/71‑1 (MQ=255) cAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCa < 1:6164971/71‑1 (MQ=255) cAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCa < 1:972355/71‑1 (MQ=255) aGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGc > 1:7908307/1‑69 (MQ=255) gTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGaa > 1:2343455/1‑66 (MQ=255) gTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGaa > 1:666805/1‑66 (MQ=255) ttAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAgg < 1:5596710/71‑1 (MQ=255) ggCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCAt < 1:6019946/71‑1 (MQ=255) cggctgcggctcgagctggctggcatcgtacccctgaatcagctcaatgCCTTACTTGAGAAGCAAgg > 1:7669122‑M1/50‑68 (MQ=255) gCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCAt < 1:7606355/70‑1 (MQ=255) aTGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCa < 1:2600461/66‑1 (MQ=255) aTGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAg > 1:115546/1‑71 (MQ=255) tGAAGTAACGGGTTCGGCCGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGc > 1:7761207/1‑71 (MQ=255) gcggctcgagctggctggcatcgtacccctgaatcagctcaatgCCTTACTTGAGAAGCAAgg > 1:6811990‑M1/45‑63 (MQ=255) aaGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCt < 1:6006207/70‑1 (MQ=255) tAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAgg < 1:19834/58‑1 (MQ=255) tAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGAtt < 1:1220204/71‑1 (MQ=255) gagctggctggcatcgtacccctgaatcagctcaatgCCTTACTTGAGAAGCAAGGc < 1:4134379‑M1/20‑1 (MQ=255) aCGGGTTCGGACGCCATTGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCAt < 1:1076533/59‑1 (MQ=255) aCGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGAtt > 1:5230777/1‑69 (MQ=255) aCGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTc < 1:7441648/70‑1 (MQ=255) aCGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTc < 1:3180481/70‑1 (MQ=255) gggTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAg > 1:2408632/1‑53 (MQ=255) ggTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGa > 1:5172919/1‑59 (MQ=255) ggTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGa > 1:4734898/1‑59 (MQ=255) ggTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGc < 1:420896/61‑1 (MQ=255) ttCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCAtt < 1:1197015/55‑1 (MQ=255) ttCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGAt < 1:5240576/63‑1 (MQ=255) cGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTAc > 1:7854225/1‑71 (MQ=255) ggACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGa < 1:1027791/59‑1 (MQ=255) ggACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCa < 1:5751149/63‑1 (MQ=255) ggACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTAc < 1:1532836/70‑1 (MQ=255) gACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGa < 1:3642167/71‑1 (MQ=255) gACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGa < 1:3093083/71‑1 (MQ=255) gACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGa < 1:470303/71‑1 (MQ=255) gcatcgtacccctgaatcagctcaatgCCTTACTTGAGAAGCAAGGCAt < 1:6871658‑M1/22‑1 (MQ=255) cGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTc < 1:1052176/59‑1 (MQ=255) cGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATg > 1:4909406/1‑71 (MQ=255) cGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATg > 1:6014908/1‑71 (MQ=255) gCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgc < 1:2314132/71‑1 (MQ=255) gCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgc < 1:3847201/71‑1 (MQ=255) gCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgc > 1:1633534/1‑71 (MQ=255) gCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgc < 1:7422117/71‑1 (MQ=255) gCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgc < 1:4292452/71‑1 (MQ=255) ccAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAg > 1:910673/1‑50 (MQ=255) ccAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAg > 1:3348686/1‑50 (MQ=255) ccAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGAtt < 1:7508869/56‑1 (MQ=255) cAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAgg > 1:1495874/1‑42 (MQ=255) cAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAggg < 1:5537250/60‑1 (MQ=255) cAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgc > 1:3408617/1‑69 (MQ=255) tgtgTATCCGCCGATGAGCACCTTACTTGAGAAGCAAgg < 1:5388370/39‑1 (MQ=255) tgtgTATCCGCCGATGAGCACCTTACTTGAGAAGCAAgg < 1:1098885/39‑1 (MQ=255) gtgtATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCAtt > 1:7178132/1‑42 (MQ=255) gtgtATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTg < 1:4652007/43‑1 (MQ=255) gtgtATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgccagcc < 1:2866452/70‑1 (MQ=255) tgtATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGccagccag < 1:2775447/71‑1 (MQ=255) ccctgaatcagctcaatgCCTTACTTGAGAAGCAAGGc > 1:6773137‑M1/19‑38 (MQ=255) gtATCCGCCGATGAGCACCTTACTTTAGAAGCAAGGCATTGAGc > 1:3418818/1‑44 (MQ=255) tCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTc > 1:1026557/1‑70 (MQ=255) tCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTc > 1:6183810/1‑70 (MQ=255) tCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCg < 1:2785602/71‑1 (MQ=255) ccgccgATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGAtt < 1:4081763/45‑1 (MQ=255) ccgccgATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGAtt < 1:3162360/45‑1 (MQ=255) cgccgATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAg > 1:5477901/1‑71 (MQ=255) gccgATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTa > 1:860424/1‑51 (MQ=255) gccgATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTa > 1:1757016/1‑51 (MQ=255) cgATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTAc < 1:3797411/50‑1 (MQ=255) cgATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAg > 1:5031907/1‑68 (MQ=255) gATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgccagc > 1:1789103/1‑58 (MQ=255) aTGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACg < 1:1246544/49‑1 (MQ=255) aTGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCa < 1:7934081/71‑1 (MQ=255) aTGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCa < 1:762719/71‑1 (MQ=255) tGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAg > 1:2195409/1‑71 (MQ=255) gAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACg > 1:2858878/1‑47 (MQ=255) gAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACg > 1:7075255/1‑47 (MQ=255) gAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACg > 1:7631606/1‑47 (MQ=255) gAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGc > 1:3696083/1‑71 (MQ=255) gAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGc > 1:445801/1‑71 (MQ=255) agcagcTTACTTGAGAAGCAAGGCATTGAGCTGAt < 1:1318940/35‑1 (MQ=255) gCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATgccagcc < 1:6263770/54‑1 (MQ=255) gCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCcagccagc > 1:3455177/1‑57 (MQ=255) gCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCcagccagc > 1:1892012/1‑57 (MQ=255) cACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGCCgg < 1:4198785/71‑1 (MQ=255) aCCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACg < 1:3484225/43‑1 (MQ=255) CCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGCCGGAt > 1:2935208‑M1/1‑71 (MQ=255) CCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGCCGGAt > 1:2271048‑M1/1‑71 (MQ=255) CCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGCCGGAt < 1:258747‑M1/71‑1 (MQ=255) | GCGATGCTGGCGCGCCAGTTAGGCCATGAAGTAACGGGTTCGGACGCCAATGTGTATCCGCCGATGAGCACCTTACTTGAGAAGCAAGGCATTGAGCTGATTCAGGGGTACGATGCCAGCCAGCTCGAGCCGCAGCCGGAT > W3110S.gb/4460515‑4460655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |