| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 35 (0.430) | 14 (0.210) | 10/80 | NT | 31.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 33 (0.500) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547305‑4547442 | aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:4734740/1‑71 (MQ=255)aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc < 1:4000921/71‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:1182567/1‑68 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:1939007/1‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc > 1:4351025‑M1/54‑70 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat < 1:1847796/70‑1 (MQ=255) aacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:7933224‑M1/52‑60 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:1219160/70‑1 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:6665434/1‑60 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:5367044/1‑70 (MQ=255) actgccaacacagcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa > 1:7590571‑M1/42‑71 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg < 1:3790999/70‑1 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:2106498/47‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAATTACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAc > 1:5888167/1‑71 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:161381‑M1/1‑45 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:3310838‑M1/1‑45 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc < 1:3784089/53‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc < 1:6291105/53‑1 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga > 1:1448964‑M1/1‑44 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat < 1:7357267/54‑1 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat < 1:2807263/54‑1 (MQ=255) acactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc > 1:5474370‑M1/35‑51 (MQ=255) aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:6187531‑M1/43‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat > 1:4127894/1‑54 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:4159655/71‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:6987900‑M1/42‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:6318011/71‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt > 1:6215203/1‑71 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaa < 1:3439553‑M1/71‑33 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaa < 1:4251620‑M1/71‑33 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggaca > 1:2728396‑M1/1‑39 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:1550988/1‑51 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:911450/1‑71 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:7354186‑M1/48‑13 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt > 1:7068228/1‑71 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 1:6276088/1‑64 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 1:3742723/1‑64 (MQ=255) cagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:3921118‑M1/45‑1 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCaaa > 1:4360147/1‑36 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:5042828‑M1/1‑34 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:7334526‑M1/1‑34 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:266997‑M1/1‑34 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttt > 1:3589585‑M1/1‑33 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:1428810/1‑69 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg > 1:569246/1‑71 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:2691969‑M1/21‑52 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:7706990‑M1/21‑52 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:3768621‑M1/21‑56 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcag < 1:2838713‑M1/71‑43 (MQ=255) aCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt < 1:7591329/63‑1 (MQ=255) aCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt < 1:7672043/63‑1 (MQ=255) aaataaatACAAGACAATTGGGGTCAttttgactcatagaggaaagcatcgcgga > 1:2285229‑M1/1‑26 (MQ=255) aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgga > 1:77921‑M1/1‑26 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa > 1:1955898‑M1/17‑71 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa > 1:5689165‑M1/16‑63 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa > 1:1814020/1‑70 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa < 1:6652628/71‑1 (MQ=255) aagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:7430239‑M1/58‑1 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat < 1:1677552/71‑1 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCataaa > 1:571953‑M1/10‑36 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt < 1:6010838/42‑1 (MQ=255) tgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa > 1:5372668‑M1/9‑71 (MQ=255) cAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttgg < 1:7403986‑M1/71‑55 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa < 1:3441170/63‑1 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt < 1:7082160‑M1/55‑40 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCataaata > 1:4951820/1‑36 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCataaata > 1:178566/1‑36 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCataaata > 1:2042040/1‑36 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggct > 1:4712805‑M1/1‑14 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:5942189/1‑52 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa > 1:4557722‑M1/6‑70 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 1:6946406‑M1/66‑1 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:4988887/1‑35 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:7197181/1‑35 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 1:6099436‑M1/3‑71 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcgga > 1:3572239‑M1/1‑11 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcgga > 1:924589‑M1/1‑11 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcgga > 1:1544774‑M1/1‑11 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct < 1:5952332‑M1/71‑66 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa > 1:3321139‑M1/1‑71 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattcta < 1:4536752‑M1/71‑67 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattcta < 1:7887123‑M1/71‑67 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGGATAAAAATATTAAAAAACGACaa < 1:2426530‑M1/70‑1 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:4317320‑M1/1‑71 (MQ=255) GCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 1:3770281‑M1/1‑64 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggtttaa > 1:5021997‑M1/1‑3 (MQ=255) CCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa > 1:4048484‑M1/1‑71 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattg < 1:3869836‑M1/71‑70 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattg > 1:7809776‑M1/1‑2 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:5377887‑M1/1‑40 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa > 1:5790643‑M1/1‑64 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:906172‑M1/1‑68 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:943599‑M1/1‑68 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg < 1:2532630‑M1/70‑1 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTAAAGCATAAAAATATTAAAAAACGACAAAAAGc > 1:2985141‑M1/1‑71 (MQ=255) | AAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547305‑4547442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |