| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 35 (0.430) | 14 (0.210) | 10/80 | NT | 31.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 33 (0.500) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
CAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACA > W3110S.gb/4547600‑4547737 | cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:7809776‑M2/1‑69 (MQ=255)cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg < 1:3869836‑M2/71‑3 (MQ=255) tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcc < 1:4536752‑M2/71‑6 (MQ=255) tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcc < 1:7887123‑M2/71‑6 (MQ=255) aGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccc < 1:5952332‑M2/71‑7 (MQ=255) atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:7276841/1‑62 (MQ=255) ttAAACCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtgg > 1:5021997‑M2/1‑59 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtc > 1:4712805‑M2/1‑56 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:2479001/1‑70 (MQ=255) ccAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttg < 1:7403986‑M2/71‑18 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATc > 1:2482607/1‑71 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:1610602/1‑71 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:696170/1‑48 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:2790481/1‑48 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:4367985/71‑1 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:6974694/71‑1 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:210424/71‑1 (MQ=255) aaaaaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg < 1:7057443/69‑1 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:6072270/1‑71 (MQ=255) aaCTGAAAAAGTTTGTCGGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg < 1:7786156/70‑1 (MQ=255) cTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtt < 1:2838713‑M2/71‑30 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtctt < 1:7082160‑M2/55‑17 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa < 1:1013316/69‑1 (MQ=255) aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttt > 1:3589585‑M2/1‑38 (MQ=255) aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAt > 1:4255453/1‑56 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttt > 1:266997‑M2/1‑37 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttt > 1:7334526‑M2/1‑37 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttt > 1:5042828‑M2/1‑37 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt < 1:2905857/71‑1 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:7057071/1‑60 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:3911509/1‑47 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:4090361/1‑47 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:4214407/1‑47 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactt < 1:3439553‑M2/71‑40 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactt < 1:4251620‑M2/71‑40 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactt > 1:2728396‑M2/1‑31 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:916926/1‑55 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttattt > 1:77921‑M2/1‑29 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaatt > 1:924589‑M2/1‑29 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaatt > 1:1544774‑M2/1‑29 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaatt > 1:3572239‑M2/1‑29 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAAtgaccccaattgtcttgtatttattt > 1:2285229‑M2/1‑29 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:3791000/42‑1 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg > 1:5788667/1‑71 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:2978385/71‑1 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:5349792/71‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:6924698/1‑41 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:5174655/1‑41 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:5637302/1‑41 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt > 1:678521/1‑39 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg < 1:4082123/36‑1 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg < 1:2037234/36‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:1139492/35‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:6155791/35‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:5290427/35‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg < 1:4811495/71‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg < 1:2670260/71‑1 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc < 1:196044/66‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:4807708/1‑71 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc > 1:2313963/1‑67 (MQ=255) tctATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttatta > 1:1448964‑M2/1‑14 (MQ=255) tATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaa < 1:7354186‑M2/48‑37 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:3598645/1‑71 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:2209712/1‑71 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:2618173/1‑65 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 1:3994279/68‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 1:7380631/70‑1 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:5965915/70‑1 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:4071030/69‑1 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca > 1:5473199/1‑70 (MQ=255) aaaatggccccaattgtcttgtatttatttgtttttttaactttattat > 1:3310838‑M2/1‑4 (MQ=255) aaaatggccccaattgtcttgtatttatttgtttttttaactttattat > 1:161381‑M2/1‑4 (MQ=255) aaaaTGGCCCCGAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:5208418/1‑69 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:7322491/1‑69 (MQ=255) aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac < 1:4284773/71‑1 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:5098938/1‑56 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:7238639/71‑1 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:2655494/71‑1 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac > 1:5009100/1‑70 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac > 1:6160645/1‑70 (MQ=255) | CAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACA > W3110S.gb/4547600‑4547737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |