| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4599762 = | 122 (1.500) | 6 (0.080) | 3/88 | NT | 5.7% | coding (772/915 nt) | yjjM | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 4599802 = | 88 (1.200) | coding (732/915 nt) | yjjM | predicted DNA‑binding transcriptional regulator | |||||
Only 100 of 180 total aligned reads displayed.
GCGCAAGGGTGGCATCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGAT > W3110S.gb/4599693‑4599831 | tcagctgccgacaatatcttttttgatcaatcgcttgagatcatctcagtcatctttcattttcactatc > 1:574801‑M1/70‑70 (MQ=255)gcgcAAGGGTGGCATCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGc > 1:1987124/1‑70 (MQ=255) cagctgccgacaatatcttttttgatcaatcgcttgagatcatctcagtcatctttcattttcactatCaa < 1:4920330‑M1/3‑1 (MQ=255) cagctgccgacaatatcttttttgatcaatcgcttgagatcatctcagtcatctttcattttcactatCaa < 1:3367836‑M1/3‑1 (MQ=255) cAAGGGTGGCATCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAAt > 1:2268833/1‑70 (MQ=255) aGGGTGGCATCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGa > 1:5064462/1‑70 (MQ=255) aGGGTGGCATCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGa > 1:2162134/1‑70 (MQ=255) aTCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCt < 1:2882589/71‑1 (MQ=255) tCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAAt < 1:985029/59‑1 (MQ=255) cAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGata > 1:6668654/1‑62 (MQ=255) cAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCACATGCTCATCGACGGCAATGatat > 1:2545377/1‑63 (MQ=255) aaGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGata > 1:3190867/1‑61 (MQ=255) aaGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGtt < 1:2336254/71‑1 (MQ=255) aGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGTCAATGATATTGCGCTGttt < 1:6469450/71‑1 (MQ=255) aGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGttt < 1:881438/71‑1 (MQ=255) gcACTGCGGCAAATCAGAGCGCTGAGAATGGGCATATGCTCATCGACGGCa < 1:7767385/50‑1 (MQ=255) cACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGttt > 1:1202259/1‑67 (MQ=255) ttgatcaatcgcttgagatcatctcagtcatctttcattttcactatc < 1:6890885‑M1/1‑1 (MQ=255) cTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGAt < 1:1663654/70‑1 (MQ=255) tGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATg < 1:2701085/50‑1 (MQ=255) cGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGc < 1:3633349/70‑1 (MQ=255) cGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCt < 1:6337848/71‑1 (MQ=255) cGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCt > 1:7790037/1‑71 (MQ=255) cGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCt > 1:15961/1‑71 (MQ=255) cGGCAAATCAGAGCGCTCAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAg > 1:1010752/1‑65 (MQ=255) ggCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCtt < 1:2959303/71‑1 (MQ=255) gaaaaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCtt < 1:4492475/68‑1 (MQ=255) gCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCttt < 1:375774/71‑1 (MQ=255) aaaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCttt < 1:759951/69‑1 (MQ=255) aaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGttt < 1:3784973/57‑1 (MQ=255) aaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAg > 1:4420896/1‑60 (MQ=255) aaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAg > 1:4303952/1‑60 (MQ=255) aaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAg > 1:5501495/1‑60 (MQ=255) aaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGt > 1:3154055/1‑71 (MQ=255) aaTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGt > 1:3108649/1‑71 (MQ=255) aTCAGAGCGCTGAGATTGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGAt > 1:4322981/1‑61 (MQ=255) aTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGa < 1:3567631/43‑1 (MQ=255) aTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGa < 1:6118759/43‑1 (MQ=255) aTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATAtt < 1:2614474/47‑1 (MQ=255) aTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGAt > 1:703850/1‑61 (MQ=255) aTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCg > 1:7932996/1‑69 (MQ=255) aTCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTc > 1:2292419/1‑71 (MQ=255) tCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGa > 1:554249/1‑59 (MQ=255) tCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTcc < 1:7134151/71‑1 (MQ=255) cAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGt > 1:3670215/1‑68 (MQ=255) gagatcatctcagtcatctttcattttcactatCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCAt < 1:1536437‑M1/38‑1 (MQ=255) agCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTaa > 1:1968347/1‑53 (MQ=255) agCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATc < 1:1912151/57‑1 (MQ=255) agCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATc < 1:6542126/57‑1 (MQ=255) agCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCAtt > 1:5611070/1‑71 (MQ=255) gatcatctcagtcatctttcattttcactatCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTg > 1:4144847‑M1/32‑71 (MQ=255) cgcTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGt < 1:7584178/47‑1 (MQ=255) cgcTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa > 1:2774100/1‑71 (MQ=255) cgcTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa > 1:2472592/1‑71 (MQ=255) tGAGAATGGTCATATGCTCATCGACGGCAATGATATTgcg > 1:6955607/1‑40 (MQ=255) tGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGAt < 1:5951827/69‑1 (MQ=255) gagaATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGt > 1:1257943/1‑71 (MQ=255) agaATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGt > 1:6924640/1‑70 (MQ=255) agaATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTg < 1:6893488/71‑1 (MQ=255) aaTGGTCATATGCTCATCGACGGCAATGATATTgcgc > 1:7145329/1‑37 (MQ=255) aaTGGTCATATGCTCATCGACGGCAATGATATTgcgc > 1:6200099/1‑37 (MQ=255) agtcatctttcattttcactatCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATa < 1:4230585‑M1/43‑1 (MQ=255) aTGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGaaa < 1:7139374/71‑1 (MQ=255) aTGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGaaa < 1:7263082/71‑1 (MQ=255) cATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa > 1:348117/1‑70 (MQ=255) atatGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa > 1:7413105/1‑69 (MQ=255) tatGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa > 1:1752063/1‑68 (MQ=255) tatGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa > 1:7179380/1‑68 (MQ=255) tatGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAg < 1:7509903/71‑1 (MQ=255) atGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCtt < 1:6598542/43‑1 (MQ=255) tGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTc > 1:2620385/1‑44 (MQ=255) tGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTc > 1:6762148/1‑44 (MQ=255) gCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGaaa > 1:600930/1‑67 (MQ=255) tCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTcc < 1:115018/45‑1 (MQ=255) tCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTcc < 1:2458662/45‑1 (MQ=255) tCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTcc < 1:5634615/45‑1 (MQ=255) aTCGACGGCAATGATATTGCGCTGTTTAAGATCGc < 1:7218585/35‑1 (MQ=255) aTCGACGGCAATGATATTGCGCTGTTTAAGATCGc < 1:5236489/35‑1 (MQ=255) tCGACGGCAATGATATTGCGCTGTTTAAGATCGCt < 1:6886807/35‑1 (MQ=255) cGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCa < 1:444703/43‑1 (MQ=255) cGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCa < 1:7838601/43‑1 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTc > 1:7895195/1‑36 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTc > 1:6836327/1‑36 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTc > 1:4783169/1‑36 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTc > 1:6622503/1‑36 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCa > 1:73129/1‑42 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGAc > 1:4860984/1‑66 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTgag < 1:4017140/70‑1 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGAATgag < 1:383110/70‑1 (MQ=255) cGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatg < 1:5408358/71‑1 (MQ=255) cGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatg < 1:5163782/71‑1 (MQ=255) cGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgat > 1:4095391/1‑70 (MQ=255) ggCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATa > 1:7295925/1‑45 (MQ=255) ggCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatga > 1:4929728/1‑71 (MQ=255) gCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTg < 1:2383181/41‑1 (MQ=255) gCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTTAgatga < 1:3398257/70‑1 (MQ=255) gCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatgat < 1:3006711/71‑1 (MQ=255) CAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTg > 1:6418494‑M1/1‑40 (MQ=255) CAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa < 1:1036809‑M1/41‑1 (MQ=255) CAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa < 1:830772‑M1/41‑1 (MQ=255) | GCGCAAGGGTGGCATCAAGGTCACTGCGGCAAATCAGAGCGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGAT > W3110S.gb/4599693‑4599831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |