| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4599762 = | 122 (1.500) | 6 (0.080) | 3/88 | NT | 5.7% | coding (772/915 nt) | yjjM | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 4599802 = | 88 (1.200) | coding (732/915 nt) | yjjM | predicted DNA‑binding transcriptional regulator | |||||
Only 100 of 142 total aligned reads displayed.
CGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGAAA > W3110S.gb/4599732‑4599872 | cgcTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa > 1:2774100/1‑71 (MQ=255)cgcTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa > 1:2472592/1‑71 (MQ=255)cgcTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa > 1:7327869/1‑71 (MQ=255)cgcTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa > 1:7231114/1‑71 (MQ=255) cTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa > 1:901392/1‑69 (MQ=255) gagaATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGt > 1:1257943/1‑71 (MQ=255) agaATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTg < 1:6893488/71‑1 (MQ=255) aaTGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGaa < 1:6140308/71‑1 (MQ=255) agtcatctttcattttcactatCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATa < 1:4230585‑M1/43‑1 (MQ=255) agtcatctttcattttcactatCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATa < 1:6969304‑M1/43‑1 (MQ=255) aTGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGaaa < 1:7139374/71‑1 (MQ=255) aTGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGaaa < 1:7263082/71‑1 (MQ=255) aTGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGaa < 1:4788544/70‑1 (MQ=255) tCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa < 1:2638947/71‑1 (MQ=255) cATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa > 1:348117/1‑70 (MQ=255) tatGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa > 1:1752063/1‑68 (MQ=255) tatGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAg < 1:7509903/71‑1 (MQ=255) tGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGAt > 1:490828/1‑71 (MQ=255) gCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGaaa > 1:600930/1‑67 (MQ=255) tCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGAt > 1:7160823/1‑65 (MQ=255) tCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTga < 1:7866294/71‑1 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACt > 1:6540637/1‑67 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTgag < 1:7498382/70‑1 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTgag < 1:4017140/70‑1 (MQ=255) gACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGAATgag < 1:383110/70‑1 (MQ=255) tatcaatgggacgaaagcgatcttaaacagcgcaatatcattgATAGTGAAAATGAAAGATGACt < 1:4230585‑M2/22‑1 (MQ=255) tatcaatgggacgaaagcgatcttaaacagcgcaatatcattgATAGTGAAAATGAAAGATGACt < 1:2181205‑M2/22‑1 (MQ=255) tatcaatgggacgaaagcgatcttaaacagcgcaatatcattgATAGTGAAAATGAAAGATGACt < 1:6969304‑M2/22‑1 (MQ=255) cGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatg < 1:5408358/71‑1 (MQ=255) cGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatg < 1:5163782/71‑1 (MQ=255) cGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgat > 1:7808645/1‑70 (MQ=255) ggCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGAtt > 1:2603755/1‑44 (MQ=255) ggCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatga > 1:6767882/1‑71 (MQ=255) ggCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatga > 1:4929728/1‑71 (MQ=255) gCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTTAgatga < 1:3398257/70‑1 (MQ=255) gCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatgat < 1:3006711/71‑1 (MQ=255) caatgggacgaaagcgatcttaaacagcgcaatatcattgATAGTGAAAATGAAAGATGACTGAGATGAtc > 1:4144847‑M2/41‑71 (MQ=255) CAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa < 1:830772‑M1/41‑1 (MQ=255) CAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa < 1:3791966‑M1/41‑1 (MQ=255) CAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa < 1:1036809‑M1/41‑1 (MQ=255) AATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGAtct > 1:5295387‑M1/1‑71 (MQ=255) atgggacgaaagcgatcttaaacagcgcaatatcattgATAGTGAAAATGAAAGATGACTGAGATGAtctc < 1:1536437‑M2/33‑1 (MQ=255) ATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGAtctc > 1:2742981‑M1/1‑71 (MQ=255) TGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa < 1:2042506‑M1/38‑1 (MQ=255) TGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGa < 1:7601830‑M1/38‑1 (MQ=255) TGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTg < 1:7875074‑M1/43‑1 (MQ=255) GATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatg < 1:4730020‑M1/64‑1 (MQ=255) atatTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGa > 1:1995544/1‑52 (MQ=255) atatTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGa > 1:6432459/1‑52 (MQ=255) atatTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAg > 1:1594092/1‑71 (MQ=255) ttGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa < 1:6700207/45‑1 (MQ=255) tGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGAt > 1:7211888/1‑71 (MQ=255) gcgcTGTTTAAGATCGCTTTCGTCCCATTGATAGTg > 1:6241395/1‑36 (MQ=255) gcgcTGTTTAAGATCGCTTTCGTCCCATTGATAGTg > 1:2646207/1‑36 (MQ=255) gcgcTGTTTAAGATCGCTTTCGTCCCATTGATAGTg > 1:6038108/1‑36 (MQ=255) cgcTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGa > 1:1603613/1‑42 (MQ=255) gcTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTg < 1:4018300/70‑1 (MQ=255) cTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGAt > 1:5438516/1‑71 (MQ=255) gTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATc > 1:1066897/1‑70 (MQ=255) tttAAGATCGCTTTCGTCCCATTGATAGTGAAAATGaaa < 1:3749621/39‑1 (MQ=255) tttAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGa < 1:4963703/44‑1 (MQ=255) tttAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatgat < 1:176551/54‑1 (MQ=255) tttAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatgat < 1:6323850/54‑1 (MQ=255) tttAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatgat < 1:7823795/54‑1 (MQ=255) ttAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGAt < 1:498500/41‑1 (MQ=255) ttAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaa > 1:2152417/1‑70 (MQ=255) tAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGa > 1:2992554/1‑39 (MQ=255) tAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGAt > 1:1997820/1‑40 (MQ=255) tAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGAt > 1:4865108/1‑40 (MQ=255) tAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACt > 1:686694/1‑44 (MQ=255) tAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaa > 1:5492740/1‑70 (MQ=255) tAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaa > 1:4471231/1‑70 (MQ=255) aaGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaaa < 1:6313740/70‑1 (MQ=255) aaGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaaa < 1:4111265/70‑1 (MQ=255) aaGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaaa < 1:4427301/70‑1 (MQ=255) aGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaaaa < 1:7356534/70‑1 (MQ=255) aTCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAgatga < 1:7468434/47‑1 (MQ=255) tCGCTTTCGTCCCATTGATAGTGAAAATGATAGATGACTgag < 1:3113954/42‑1 (MQ=255) tCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGc > 1:3220385/1‑54 (MQ=255) cGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGAt > 1:3973148/1‑56 (MQ=255) cTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGata > 1:3319512/1‑69 (MQ=255) ttCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGAt < 1:6084296/52‑1 (MQ=255) ttCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaaaa < 1:2929629/62‑1 (MQ=255) ttCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaaaaa < 1:459680/62‑1 (MQ=255) tCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGa > 1:1046312/1‑50 (MQ=255) tCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGa > 1:2084248/1‑50 (MQ=255) tCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTc > 1:7675434/1‑71 (MQ=255) tCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTc > 1:3667506/1‑71 (MQ=255) cGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTc < 1:293583/70‑1 (MQ=255) cGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCg > 1:5834913/1‑71 (MQ=255) ccATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAg < 1:5564199/58‑1 (MQ=255) ccATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAg < 1:83300/58‑1 (MQ=255) ccATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCg > 1:871618/1‑67 (MQ=255) ttgATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTg < 1:3367836‑M2/68‑1 (MQ=255) tgATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGCCAGCTg > 1:6890340‑M2/3‑70 (MQ=255) gATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCaa < 1:6890885‑M2/47‑1 (MQ=255) gATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGa > 1:5613435‑M2/2‑70 (MQ=255) gATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGa > 1:574801‑M2/2‑70 (MQ=255) gATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGa > 1:1361446‑M2/2‑70 (MQ=255) aTAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGaaa < 1:7869643/71‑1 (MQ=255) | CGCTGAGAATGGTCATATGCTCATCGACGGCAATGATATTGCGCTGTTTAAGATCGCTTTCGTCCCATTGATAGTGAAAATGAAAGATGACTGAGATGATCTCAAGCGATTGATCAAAAAAGATATTGTCGGCAGCTGAAA > W3110S.gb/4599732‑4599872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |