| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 144523 = | 68 (0.840) | 6 (0.080) | 3/88 | NT | 7.8% | intergenic (+51/‑54) | yadH/yadI | predicted transporter subunit/predicted PTS Enzyme IIA |
| ? | W3110S.gb | 144548 = | 81 (1.110) | intergenic (+76/‑29) | yadH/yadI | predicted transporter subunit/predicted PTS Enzyme IIA | |||||
Only 100 of 128 total aligned reads displayed.
TTTCCTCTCCTCTGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGC > W3110S.gb/144478‑144614 | tttCCTCTCCTCTGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTa < 1:4100825/71‑1 (MQ=255)tttCCTCTCCTCTGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTa < 1:3849784/71‑1 (MQ=255) tcctctcctcTGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGa > 1:6192873/1‑71 (MQ=255) tcctctcctcTGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGa > 1:5336929/1‑71 (MQ=255) tcctctcctcTGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGa > 1:2470026/1‑71 (MQ=255) acccaacctaacatcgccttcctccttagccgaaaatcagtctACCCTTTATCAACAATGGTCAGGGTAg > 1:1815315‑M1/44‑70 (MQ=255) cctctcctctGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGa > 1:5500153/1‑70 (MQ=255) ctcctctGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGa > 1:629159/1‑71 (MQ=255) tcctctGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTg < 1:6717987/69‑1 (MQ=255) tcctctGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGAt > 1:4148133/1‑71 (MQ=255) cctctGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGAtt > 1:1768288/1‑71 (MQ=255) cctctGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGAtt > 1:7015192/1‑71 (MQ=255) gATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTc < 1:4208124/68‑1 (MQ=255) gATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGc > 1:1834361/1‑71 (MQ=255) aTTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGc > 1:2472869/1‑70 (MQ=255) tttGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGAttt < 1:2732186/64‑1 (MQ=255) gggggAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAag > 1:2756720/1‑70 (MQ=255) gggggAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAag < 1:2893665/70‑1 (MQ=255) ttcctccttagccgaaaatcagtctACCCTTTATCAACAATGGTCAGGGTAGAc < 1:3261848‑M1/29‑1 (MQ=255) ttcctccttagccgaaaatcagtctACCCTTTATCAACAATGGTCAGGGTAGAc < 1:6989776‑M1/29‑1 (MQ=255) gggAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAaggag > 1:3053861/1‑71 (MQ=255) ggAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAaggagg < 1:2193363/71‑1 (MQ=255) gagaGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAaggagg > 1:3006496/1‑70 (MQ=255) gagaGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAggagga < 1:297313/71‑1 (MQ=255) agagGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGaa < 1:1997268/71‑1 (MQ=255) agagGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGaa < 1:7626121/71‑1 (MQ=255) agagGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGaa < 1:4319936/71‑1 (MQ=255) ccttagccgaaaatcagtctACCCTTTATCAACAATGGTCAGGGTAg > 1:5461888‑M1/21‑47 (MQ=255) ggagTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGc < 1:47678/71‑1 (MQ=255) gagTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGAc < 1:3001402/46‑1 (MQ=255) gagTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCg > 1:7280807/1‑55 (MQ=255) gagTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAg > 1:7784679/1‑68 (MQ=255) tGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGt > 1:7250599/1‑69 (MQ=255) gACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTa < 1:4640909/70‑1 (MQ=255) aCGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGc > 1:1260137/1‑49 (MQ=255) aCGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAaggag > 1:5384736/1‑56 (MQ=255) aCGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTa < 1:1443517/69‑1 (MQ=255) ggCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAaggagg < 1:138825/55‑1 (MQ=255) ggCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGtt < 1:1794103/71‑1 (MQ=255) cTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTgg < 1:3440946/71‑1 (MQ=255) cTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTgg < 1:2611548/71‑1 (MQ=255) cTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTgg < 1:6144691/71‑1 (MQ=255) tATCACCCTTTATCAACAATGGTCAGGGTAGACTGAttt < 1:1093708/39‑1 (MQ=255) gtctaccctgaccattgttgataaagggtAGACTGATTTTCGGCTAAGGAGGaa < 1:3261848‑M2/25‑1 (MQ=255) gtctaccctgaccattgttgataaagggtAGACTGATTTTCGGCTAAGGAGGaa < 1:6989776‑M2/25‑1 (MQ=255) gtctaccctgaccattgttgataaagggtAGACTGATTTTCGGCTAAGGAGGaa < 1:7589019‑M2/25‑1 (MQ=255) aTCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTggg > 1:5998387/1‑70 (MQ=255) aTCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTggg > 1:3179918/1‑70 (MQ=255) aTCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTggg > 1:5514473/1‑70 (MQ=255) tCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGt < 1:7935912/70‑1 (MQ=255) tCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGt > 1:6554022/1‑70 (MQ=255) tCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGt > 1:5718800/1‑70 (MQ=255) ctaccctgaccattgttgataaagggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGt > 1:1815315‑M2/28‑70 (MQ=255) cACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTa < 1:5267709/70‑1 (MQ=255) ACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTc > 1:4549753‑M1/1‑37 (MQ=255) CCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAagga < 1:2356575‑M1/45‑1 (MQ=255) CCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGtt > 1:7766872‑M1/1‑63 (MQ=255) CCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAAt > 1:7709483‑M1/1‑70 (MQ=255) CCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAAt < 1:7171494‑M1/70‑1 (MQ=255) CCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAAtt > 1:2458026‑M1/1‑70 (MQ=255) CCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTa > 1:1522052‑M1/1‑71 (MQ=255) CCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTa > 1:5905062‑M1/1‑71 (MQ=255) CCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTa > 1:4434072‑M1/1‑71 (MQ=255) CTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTAc > 1:5561218‑M1/1‑71 (MQ=255) CTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTAc > 1:4257583‑M1/1‑71 (MQ=255) ttATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAagg < 1:6606293/40‑1 (MQ=255) ttATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGc < 1:6342089/48‑1 (MQ=255) ttATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGc < 1:7157133/48‑1 (MQ=255) ttATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGc < 1:4726132/48‑1 (MQ=255) ttATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGc < 1:5161018/48‑1 (MQ=255) ttATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCt > 1:2520228/1‑71 (MQ=255) aTCAACAATGGTCAGGGTAGACTGATTTTCGGCTa > 1:6524829/1‑35 (MQ=255) aTCAACAATGGTCAGGGTAGACTGATTTTCGGCTAaggag > 1:7133710/1‑40 (MQ=255) aTCAACAATGGTCAGGGTAGACTGATTTTCGGCTAagga > 1:3727790/1‑39 (MQ=255) aTCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGtt > 1:3039564/1‑57 (MQ=255) tCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGt > 1:5853407/1‑60 (MQ=255) tCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGt > 1:5923598/1‑60 (MQ=255) tCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGt > 1:2301752/1‑60 (MQ=255) tCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGt < 1:3793529/70‑1 (MQ=255) tCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGt < 1:1950920/70‑1 (MQ=255) caacaaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTggg < 1:1374553/58‑1 (MQ=255) aacaaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTgg > 1:2006357/1‑56 (MQ=255) aacaaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCAc < 1:2271144/71‑1 (MQ=255) acaaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTa > 1:4769424/1‑62 (MQ=255) acaaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCa < 1:5538376/69‑1 (MQ=255) acaaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCAc > 1:1537833/1‑70 (MQ=255) acaaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACg < 1:7433055/71‑1 (MQ=255) caaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGa > 1:4968939/1‑71 (MQ=255) caaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGa > 1:1425328/1‑71 (MQ=255) aaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTa > 1:7619865/1‑60 (MQ=255) aaTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTa > 1:5232106/1‑60 (MQ=255) aTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGaa > 1:4773471/1‑36 (MQ=255) aTGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATg < 1:4913252/71‑1 (MQ=255) tCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGAt < 1:5497421/38‑1 (MQ=255) tCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCg < 1:3777648/71‑1 (MQ=255) gagggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCgg > 1:464046‑M2/7‑71 (MQ=255) agggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTa > 1:7367296‑M2/6‑40 (MQ=255) agggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCggg < 1:4113467‑M2/66‑1 (MQ=255) agggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCggg > 1:2266088‑M2/6‑71 (MQ=255) agggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTT‑GGTAATTACCTGTCACGATGACCGGgc > 1:168426‑M2/6‑71 (MQ=255) | TTTCCTCTCCTCTGGATTTGGGGGAGAGGAGTTTTGACGGCTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGC > W3110S.gb/144478‑144614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |