BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 846152	69 (0.850)	7 (0.110) +TTTATGCGTTT	3/76	NT	10.2%	intergenic (‑250/+11)	ybiO/glnQ	predicted mechanosensitive channel/glutamine transporter subunit
*	?	W3110S.gb	2944517 =	90 (1.110)	7 (0.110) +TTTATGCGTTT	3/76	NT	10.2%	intergenic (‑19/+220)	ygdL/mltA	conserved hypothetical protein/membrane‑bound lytic murein transglycosylase A

Only 100 of 116 total aligned reads displayed.

GCTGTGCCACCAAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTC  >  W3110S.gb/2944449‑2944587

 cTGTGCCACCAAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAggg                                                                     >  1:7599064/1‑71 (MQ=255)

   gtgCCACCAAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGc                                                                    >  1:6590683/1‑70 (MQ=255)

    tgCCACCAAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGc                                                                    <  1:2512143/69‑1 (MQ=255)

    tgCCACCAAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGa                                                                  <  1:1110391/71‑1 (MQ=255)

      ccaccaAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAgg                                                                >  1:7430951/1‑71 (MQ=255)

        accaAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAg                                                                       >  1:2144983/1‑62 (MQ=255)

        accaAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGt                                                               >  1:1177184/1‑70 (MQ=255)

          caAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGc                                                                    <  1:2803476/63‑1 (MQ=255)

          caAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTa                                                             >  1:7829349/1‑70 (MQ=255)

          caAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTAt                                                            >  1:7092598/1‑71 (MQ=255)

          caAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTAt                                                            <  1:22666/71‑1 (MQ=255)

          caAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTAt                                                            >  1:1031054/1‑71 (MQ=255)

          caAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTAt                                                            >  1:542234/1‑71 (MQ=255)

          caAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTAt                                                            >  1:4953475/1‑71 (MQ=255)

            aaaCGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATcc                                                          <  1:7021232/71‑1 (MQ=255)

            aaaCGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATcc                                                          >  1:1697734/1‑71 (MQ=255)

              aCGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCt                                                        >  1:1453826/1‑71 (MQ=255)

               cGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCt                                                        >  1:6303573/1‑70 (MQ=255)

                gCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCa                                                      <  1:1285302/71‑1 (MQ=255)

                gCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCa                                                      <  1:5846563/71‑1 (MQ=255)

                 cTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCg                                                                   <  1:1671911/57‑1 (MQ=255)

                  tGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTAt                                                            >  1:671442/1‑63 (MQ=255)

                  tGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTAt                                                            >  1:2651647/1‑63 (MQ=255)

                   gACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCAcc                                                    >  1:6789007/1‑70 (MQ=255)

                    aCGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGtt                                                              <  1:4477584/59‑1 (MQ=255)

                    aCGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGtt                                                              <  1:4029945/59‑1 (MQ=255)

                    aCGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCAccc                                                   >  1:396073/1‑70 (MQ=255)

                    aCGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCAccc                                                   >  1:4449316/1‑70 (MQ=255)

                    aCGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCAccc                                                   >  1:2471558/1‑70 (MQ=255)

                    aCGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCAccc                                                   >  1:1854227/1‑70 (MQ=255)

                    aCGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCt                                                  <  1:5193785/71‑1 (MQ=255)

                      gCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCt                                                        <  1:3755356/63‑1 (MQ=255)

                       ccATGCATCACTAATTACCACAGACATAGCACCTCAGAATTaaaaa                                                                        <  1:1921318/46‑1 (MQ=255)

                        cATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAAc                                              >  1:1556785/1‑71 (MQ=255)

                        cATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAAc                                              >  1:5605152/1‑71 (MQ=255)

                         aTGCATCACTAATTACCACAGACATAGCACCTCAGAATTaaaaa                                                                        >  1:4545668/1‑44 (MQ=255)

                          tGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGc                                            <  1:3712770/71‑1 (MQ=255)

                          tGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGc                                            <  1:338882/71‑1 (MQ=255)

                           gCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCg                                                                   <  1:2761157/47‑1 (MQ=255)

                              tCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGa                                                                  <  1:2989877/45‑1 (MQ=255)

                              tCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATaa                                        <  1:7082381/71‑1 (MQ=255)

                                aCTAATTACCACAGACATAGCACCTCAGAATTAAAAAgg                                                                      >  1:7796458/1‑39 (MQ=255)

                                aCTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGt                                                               <  1:2225164/46‑1 (MQ=255)

                                aCTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATaaa                                       <  1:6457361/70‑1 (MQ=255)

                                aCTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAAt                                      >  1:5101661/1‑71 (MQ=255)

                                aCTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAAt                                      <  1:509278/71‑1 (MQ=255)

                                 ctgataagcgtagcgcatcaggcatttatgcgtttAGGGCGAGGTTATCCCTCACCCTaa                                                >  1:4886341‑M2/36‑60 (MQ=255)

                                 ctgataagcgtagcgcatcaggcatttatgcgtttAGGGCGAGGTTATCCCTCACCCTaa                                                >  1:1362753‑M2/36‑60 (MQ=255)

                                 ctgataagcgtagcgcatcaggcatttatgcgtttAGGGCGAGGTTACCCCTCACCCTaa                                                >  1:7126223‑M2/36‑60 (MQ=255)

                                  tAATTACCACAGACATCGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTa                                                 <  1:5286085/58‑1 (MQ=255)

                                  tAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTa                                                 <  1:2790540/58‑1 (MQ=255)

                                  tAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATaa                                        >  1:4874415/1‑67 (MQ=255)

                                   gataagcgtagcgcatcaggcatttatgcgtttAGGGCGAGGTTATCCCTCa                                                      <  1:5112741‑M2/19‑1 (MQ=255)

                                   gataagcgtagcgcatcaggcatttatgcgtttAGGGCGAGGTTATCCCTCa                                                      <  1:2491129‑M2/19‑1 (MQ=255)

                                   aaTTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGcc                                   >  1:5777698/1‑71 (MQ=255)

                                    aTTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTc                                                       >  1:3282758/1‑50 (MQ=255)

                                    aTTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCa                                                      >  1:1690787/1‑51 (MQ=255)

                                    aTTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAGAtcgg                                   <  1:5223680/70‑4 (MQ=255)

                                       aCCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTaaa                                               >  1:6023401/1‑55 (MQ=255)

                                       aCCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGAt                               >  1:7120911/1‑71 (MQ=255)

                                       aCCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATACCTCACCCTAAACGCATAAATGCCTGAt                               >  1:2725947/1‑71 (MQ=255)

                                        gcgtagcgcatcaggcatttatgcgtttAGGGCGAGGTTATCCCTCa                                                      >  1:3066314‑M2/29‑47 (MQ=255)

                                        ccACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTa                                                 <  1:1800179/52‑1 (MQ=255)

                                        ccACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTa                                                 <  1:6430649/52‑1 (MQ=255)

                                        ccACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTa                                                 <  1:7350795/52‑1 (MQ=255)

                                           caGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATgcgc                           <  1:2662319/71‑1 (MQ=255)

                                           caGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATgcgc                           >  1:7406378/1‑71 (MQ=255)

                                           caGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATgcg                            >  1:1441150/1‑70 (MQ=255)

                                                aTAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATa                                         <  1:2050811/52‑1 (MQ=255)

                                                aTAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGc                      >  1:7260651/1‑71 (MQ=255)

                                                aTAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGc                      >  1:4098544/1‑71 (MQ=255)

                                                aTAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGc                      >  1:3997364/1‑71 (MQ=255)

                                                aTAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGc                      <  1:1976859/71‑1 (MQ=255)

                                                 tAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATg                              <  1:7552645/62‑1 (MQ=255)

                                                    cACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTAt                  <  1:5000997/71‑1 (MQ=255)

                                                    cACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTAt                  <  1:6900382/71‑1 (MQ=255)

                                                     aCCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATc                 <  1:2257424/71‑1 (MQ=255)

                                                       cTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATg                              <  1:3141602/56‑1 (MQ=255)

                                                       cTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTa                         <  1:4364458/61‑1 (MQ=255)

                                                         cAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTaaa                                               >  1:7075041/1‑37 (MQ=255)

                                                         cAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTa                                                 >  1:6180868/1‑35 (MQ=255)

                                                         cAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGcc                                   >  1:5478471/1‑49 (MQ=255)

                                                         cAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGAt                               >  1:7855429/1‑53 (MQ=255)

                                                         cAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTAt                  >  1:1887272/1‑66 (MQ=255)

                                                          aGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACg                       >  1:1246224/1‑60 (MQ=255)

                                                          aGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACg                       >  1:2640156/1‑60 (MQ=255)

                                                          aGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACg                       >  1:6871118/1‑60 (MQ=255)

                                                          aGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGcc            >  1:7301787/1‑71 (MQ=255)

                                                           gAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCt                     >  1:678443/1‑61 (MQ=255)

                                                             aTTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATg                                     <  1:2083368/43‑1 (MQ=255)

                                                             aTTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTAc         <  1:1345250/71‑1 (MQ=255)

                                                              ttAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCt                     >  1:4059997/1‑58 (MQ=255)

                                                                aaaaaGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACAt       >  1:7913664/1‑70 (MQ=255)

                                                                 aaaaGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATaa     >  1:1982183/1‑71 (MQ=255)

                                                                  aaaGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCt                                  >  1:5715604/1‑41 (MQ=255)

                                                                   aaGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACt   >  1:6738226/1‑71 (MQ=255)

                                                                    aGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTc  >  1:5389425/1‑71 (MQ=255)

                                                                    aGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTc  >  1:2224735/1‑71 (MQ=255)

                                                                    aGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTc  <  1:3655880/71‑1 (MQ=255)

                                                                    aGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTc  <  1:872585/71‑1 (MQ=255)

GCTGTGCCACCAAAACGCTGACGCCATGCATCACTAATTACCACAGACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTC  >  W3110S.gb/2944449‑2944587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.