| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3575922 = | 54 (0.660) | 5 (0.070) | 3/88 | NT | 10.0% | coding (313/711 nt) | yihL | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 3575940 = | 42 (0.570) | coding (295/711 nt) | yihL | predicted DNA‑binding transcriptional regulator | |||||
GATGGCGTCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGACTGTAATT > W3110S.gb/3575870‑3576009 | gATGGCGTCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAAccc > 1:4898185/1‑71 (MQ=255) gcgagctttcagcgggccgcaattgagcaagggcgagagccttcctgggGGTTTTTCTCGGTAAAcccc < 1:4368607‑M1/20‑1 (MQ=255) gcgagctttcagcgggccgcaattgagcaagggcgagagccttcctgggGGTTTTTCTCGGTAAAcccc < 1:3307165‑M1/20‑1 (MQ=255) gcgagctttcagcgggccgcaattgagcaagggcgagagccttcctgggGGTTTTTCTCGGTAAAcccc < 1:2954963‑M1/20‑1 (MQ=255) gTCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGa < 1:708570/71‑1 (MQ=255) gTCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGa < 1:5871107/71‑1 (MQ=255) gTCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGa < 1:4476654/71‑1 (MQ=255) gTCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGa < 1:4307572/71‑1 (MQ=255) tCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGaa < 1:6852298/71‑1 (MQ=255) aCTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCa > 1:989790/1‑65 (MQ=255) tGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGaa < 1:3990693/67‑1 (MQ=255) cAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGa < 1:3425393/64‑1 (MQ=255) cAATCAGTGGCGCGAGCGTCTCCGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGctct < 1:6029950/71‑1 (MQ=255) tCATTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGc < 1:2369195/71‑1 (MQ=255) aGTGGCGCGAGCGTCTCGGGAATATCGATGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGccc > 1:2235110/1‑71 (MQ=255) gTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCt < 1:3899986/71‑1 (MQ=255) gTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCt > 1:5942912/1‑71 (MQ=255) gcgcGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGc > 1:2274782/1‑71 (MQ=255) gAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCaa > 1:1460517/1‑71 (MQ=255) gCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCtt > 1:743172/1‑63 (MQ=255) cGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTg < 1:6553896/71‑1 (MQ=255) cGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTg > 1:183105/1‑71 (MQ=255) cGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTg < 1:1804627/71‑1 (MQ=255) gTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGc < 1:4980967/71‑1 (MQ=255) tctcGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCa < 1:7525473/43‑1 (MQ=255) tctcGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGc < 1:7834117/50‑1 (MQ=255) cGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGc < 1:2151996/70‑1 (MQ=255) gggAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTg < 1:3124762/57‑1 (MQ=255) gggAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTg < 1:2264245/57‑1 (MQ=255) ggAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGc < 1:5307141/57‑1 (MQ=255) ggAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGccc > 1:6388384/1‑70 (MQ=255) ggAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCg > 1:1460426/1‑71 (MQ=255) ggAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGACCTTGCTCAATTGCGGCCCg > 1:6040271/1‑71 (MQ=255) tatCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGc > 1:538004/1‑47 (MQ=255) tatCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGc > 1:1906927/1‑47 (MQ=255) tCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTg < 1:3545012/58‑1 (MQ=255) cGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAgg > 1:6584956/1‑37 (MQ=255) cGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAg > 1:7046315/1‑71 (MQ=255) gCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCg > 1:7071503/1‑58 (MQ=255) gCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGc < 1:3746635/71‑1 (MQ=255) cTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGct > 1:6555616/1‑37 (MQ=255) tGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCtt < 1:2133660/45‑1 (MQ=255) gTACGGTTTTTCTAGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGAGGCCCGCTGAAAGCTc < 1:237053/69‑1 (MQ=255) ggggtttaccgagaaaaaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGc < 1:2954963‑M2/49‑1 (MQ=255) ggggtttaccgagaaaaaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGc < 1:4368607‑M2/49‑1 (MQ=255) ggggtttaccgagaaaaaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGc < 1:3307165‑M2/49‑1 (MQ=255) aCGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGcc < 1:4929644/70‑1 (MQ=255) aCGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGcc > 1:3086177/1‑70 (MQ=255) ggtttaccgagaaaaaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTg < 1:4181303‑M2/30‑1 (MQ=255) GTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTg < 1:5652642‑M1/47‑1 (MQ=255) tttaccgagaaaaaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCg > 1:1625375‑M2/17‑48 (MQ=255) TTTTCTCGTTAACCCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGc > 1:3536103‑M1/1‑46 (MQ=255) TTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAg < 1:4930232‑M1/70‑1 (MQ=255) TTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGc < 1:3419342‑M1/71‑1 (MQ=255) TTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGc > 1:6331448‑M1/1‑63 (MQ=255) TTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGc < 1:3860675‑M1/70‑1 (MQ=255) TTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCt < 1:3585616‑M1/71‑1 (MQ=255) ttCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCt < 1:1519821/70‑1 (MQ=255) tctcGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCgg > 1:3053492/1‑45 (MQ=255) tctcGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCg > 1:474928/1‑63 (MQ=255) cGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCg > 1:5073388/1‑41 (MQ=255) ggTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGAc > 1:1684142/1‑61 (MQ=255) ggTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGa > 1:3394262/1‑70 (MQ=255) ggTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGa > 1:2196744/1‑70 (MQ=255) ggTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGa < 1:2215599/70‑1 (MQ=255) ggTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGAc > 1:7541909/1‑71 (MQ=255) gTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGa < 1:3590307/48‑1 (MQ=255) gTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGa < 1:3599490/48‑1 (MQ=255) gTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGc < 1:7414923/56‑1 (MQ=255) tAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGACTg < 1:653690/71‑1 (MQ=255) aaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCg < 1:4931940‑M2/37‑1 (MQ=255) aaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCg < 1:2518456‑M2/37‑1 (MQ=255) aaccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGACTGt < 1:1001847‑M2/66‑1 (MQ=255) accCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCg > 1:5904335‑M2/4‑35 (MQ=255) accCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGACTGTaa > 1:861290‑M2/4‑71 (MQ=255) ccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGaaa > 1:6695323‑M2/3‑45 (MQ=255) ccCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGc < 1:2415719‑M2/56‑1 (MQ=255) cCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTg > 1:7530731‑M2/2‑41 (MQ=255) cccAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCg > 1:5498009/1‑37 (MQ=255) cccAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAg > 1:201845/1‑44 (MQ=255) cccAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAg > 1:2358294/1‑44 (MQ=255) cccAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGACTGTAAtt > 1:4178713/1‑70 (MQ=255) cccAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGACTGTAAtt > 1:1606052/1‑70 (MQ=255) | GATGGCGTCACTGCAATCAGTGGCGCGAGCGTCTCGGGAATATCGCTGGTACGGTTTTTCTCGGTAAACCCCCAGGAAGGCTCTCGCCCTTGCTCAATTGCGGCCCGCTGAAAGCTCGCCGACAGCTCCGGACTGTAATT > W3110S.gb/3575870‑3576009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |