| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 66 (1.430) | 40 (0.860) | 26/102 | NT | 37.6% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 67 (1.450) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/713887‑713954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > W3110S.gb/2809398‑2809467 TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG > 1:1239873/1‑71 CGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC > 1:1948475/1‑71 GAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCT > 1:663871/1‑71 ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA < 1:1901296/71‑1 CATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT > 1:4276720/1‑68 CATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT > 1:3842241/1‑68 AGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGG < 1:4091784/71‑1 TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAC < 1:2841973/52‑1 GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA < 1:421790/70‑1 GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA < 1:4084822/70‑1 GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACC > 1:2426380/1‑71 GCAAATCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACC > 1:330057/1‑71 AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA < 1:1445528/71‑1 TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA > 1:3794981/1‑71 TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATAC > 1:2746188/1‑66 CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG > 1:3636084/1‑42 GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA > 1:711622/1‑69 GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA > 1:779456/1‑69 GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATAC > 1:4278066/1‑60 GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATAC < 1:1309385/60‑1 GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTC > 1:2747473/1‑56 GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG < 1:141562/42‑1 CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATcc > 1:2333991/1‑65 GAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT < 1:2773297/44‑1 GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT > 1:2085288/1‑42 GATTGAGAAGGTTTGCGGAACTATCTAAAGGCTGAAATTAAT > 1:1648280/1‑42 GATTGAGAAGGTTTGCGGAACCATCTAACGGCTGAAA < 1:1569735/37‑1 TTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA < 1:2347144/47‑1 TGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA > 1:3236092/1‑38 GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG < 1:1882224/39‑1 AGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT < 1:2808378/37‑1 AGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA > 1:3313726/1‑36 GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT < 1:3072965/64‑1 GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA > 1:2506677/1‑38 AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCA < 1:428972/71‑1 AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT < 1:3419927/71‑1 AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT > 1:3980578/1‑71 TTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG > 1:4003522/1‑52 CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGCATAGTTCGTTTACGCCCATTGAACAA < 1:1569655/71‑1 GGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAA > 1:3363809/1‑71 GAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAT < 1:1967798/71‑1 GAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAT < 1:636930/71‑1 AACTATCTAACGGCTGAAATTAATGAGGTCATACCCA < 1:1474419/37‑1 TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT < 1:1886532/49‑1 TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT < 1:3549396/49‑1 CTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT < 1:4095138/46‑1 CTAACGGCTGAAATTAATGAGGGCATACCCAAATGGATAGTTCGTTTACGCCCATTGAAC < 1:659020/60‑1 AACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATT > 1:3232661/1‑71 ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > 1:4232323/1‑71 ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATT < 1:2906540/70‑1 ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC < 1:4123673/49‑1 TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/713887‑713954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > W3110S.gb/2809398‑2809467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |