New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	1098035 =	33 (0.710)	3 (0.070)	3/90	NT	8.6%	intergenic (‑142/‑92)	serX/ycdW	tRNA‑Ser/2‑ketoacid reductase
	?	W3110S.gb	1098067 =	35 (0.860)					intergenic (‑174/‑60)	serX/ycdW	tRNA‑Ser/2‑ketoacid reductase

TTGTGCGAAATTTATTCGCACTTATCGTTATGATCTACAAAGGCCACCAGCATAACAAATCCGTGGTCGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1098108‑1098035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTTTTCGGGAGTCAGTATGGATA  >  W3110S.gb/1098067‑1098133                                                                                                                                               TTGTGCGAAATTTATTCGCACTTATCGTTATGATCTACAAAGGCCACCAGCATAACAAATCCGTGGTCGGT                                                                        <  1:3339022/71‑1   GTGCGAAATTTATTCGCACTTATCGTTATGATCTACAAAGGCCACCAGCATAACAAATCCGTGGTCGGTGG                                                                      >  1:109024/1‑71   GTGCGAAATTTATTCGCACTTATCGTTATGATCTACAAAGGCCACCAGCATAACAAATCCGTGGTCGGTGG                                                                      >  1:3742218/1‑71   GTGCGAAATTTATTCGCACTTATCGTTATGATCTACAAAGGCCACCAGCATAACAAATCCGTGGTCGGTG                                                                       >  1:103845/1‑70            TTATTCGCACTTATCGTTATGATCTACAAAGGCCACCAGCATAACAAATCCGTGGTCGG                                                                         >  1:2677972/1‑59                                       AAAGGCCACCAGCATAACAAATCCGTGGTCGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTT                                  >  1:1732084/1‑71                                            CCACCAGCATAACAAATCCGTGGTCGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAA                                      <  1:560395/62‑1                                                     TAACAAATCCGTGGTCGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTT                                  <  1:3263291/57‑1                                                                       TGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTTTTCGGGAGTCAGTATGGATA  >  1:2371993/1‑71                                                                        GGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTTTTCGGGAGT             >  1:3655473/1‑59                                                                          CCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTT                      >  1:3693366/1‑48                                                                                                                                               TTGTGCGAAATTTATTCGCACTTATCGTTATGATCTACAAAGGCCACCAGCATAACAAATCCGTGGTCGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1098108‑1098035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTTTTCGGGAGTCAGTATGGATA  >  W3110S.gb/1098067‑1098133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.