New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 2173564NA (NA)107 (2.360) 58/100 NT 100% pseudogene (307/2041 nt)
pseudogene (307/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?W3110S.gb 3920278 = 0 (0.000)coding (91/213 nt) cspA major cold shock protein

Only 100 of 145 total aligned reads displayed.

GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173495‑2173564
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA  >  W3110S.gb/3920278‑3920346
                                                                                                                                           
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                      <  1:1116918/71‑1
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                      <  1:3344897/71‑1
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                      <  1:1225805/71‑1
 CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                      >  1:152528/1‑70
  CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA                                                                    >  1:2776464/1‑71
   TCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA                                                                    >  1:2228663/1‑70
    CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt                                                                  >  1:2633932/1‑70
    CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt                                                                  >  1:1552617/1‑70
    CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACA                                                                  >  1:253891/1‑71
    CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA                                                                    >  1:2447752/1‑69
     AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACtt                                                                 >  1:3587162/1‑69
     AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACA                                                                  <  1:908312/70‑1
      GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATC                                                                <  1:3963262/71‑1
        CCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg                                                              >  1:1662414/1‑69
        CCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg                                                              >  1:2362064/1‑69
        CCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                              >  1:1409887/1‑71
        CCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                              >  1:997335/1‑71
        CCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                              >  1:1561236/1‑71
         CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCggt                                                             <  1:3745598/71‑4
          GGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA                                                            <  1:2208542/71‑1
           GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTT                                                             <  1:311277/69‑1
           GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                              >  1:449429/1‑68
            AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg                                                              <  1:1435614/67‑3
            AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA                                                            >  1:3026180/1‑69
            AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA                                                                    <  1:1751037/61‑1
             ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAG                                                         >  1:612725/1‑71
               AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC                                                        >  1:716237/1‑70
                ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCA                                                      >  1:1096064/1‑71
                 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCAT                                                     >  1:947663/1‑71
                 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCAT                                                     >  1:227718/1‑71
                 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACAC                                                                   >  1:525174/1‑57
                      AAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT                                                  >  1:1397040/1‑69
                      AAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                      >  1:2604314/1‑49
                       AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                               <  1:638445/71‑1
                       AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                               <  1:1768009/71‑1
                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA                                                                    >  1:898083/1‑47
                           AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTATAGCCATCGTCAGGAGT                                           <  1:3050237/71‑1
                           AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT                                           <  1:2010157/71‑1
                           AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT                                           <  1:2091031/71‑1
                               CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT                                                              <  1:2615136/48‑1
                                 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCTTTAGAGCCATCGTCAGGAGTGA                                         <  1:3876979/67‑1
                                 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA                                                            <  1:3780701/48‑1
                                  CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCT                                                               >  1:4120641/1‑44
                                  CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                      >  1:3859395/1‑37
                                   GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA                                     <  1:2649524/69‑1
                                   GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                      >  1:2770619/1‑36
                                    CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATG                                       <  1:1126210/66‑1
                                     TTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCC                                  <  1:649932/70‑1
                                     TTAGGCCTGTGTCCATATTACGTGGGTAGGATCAC                                                                     <  1:2542228/35‑1
                                      TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA                                     >  1:2191938/1‑66
                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg                                                              >  1:3465160/1‑38
                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg                                                              >  1:2803368/1‑38
                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG                                 <  1:3909985/69‑1
                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG                                 >  1:629231/1‑69
                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA                                                >  1:16507/1‑54
                                        GGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAG                              <  1:1398286/71‑1
                                        GGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAA                               >  1:101064/1‑70
                                         GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTT                                                             <  1:1997301/39‑1
                                           CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGA                                      <  1:4085971/60‑1
                                           CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA                                             >  1:3569311/1‑53
                                           CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATC                                                    <  1:1100868/46‑1
                                           CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGA                                                          >  1:1068723/1‑40
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT                         <  1:2925998/70‑1
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT                         <  1:3144895/70‑1
                                              TGTCCATATTACGTGGGTAGGATCACACATCTTTAG                                                           >  1:1933907/1‑36
                                                TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGT                       <  1:134188/70‑1
                                                TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                               <  1:3237879/46‑1
                                                 CCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTC                      >  1:3974743/1‑70
                                                 CCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGT                       >  1:732369/1‑69
                                                 CCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT                                           <  1:2094272/49‑1
                                                  CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG                    >  1:1519843/1‑71
                                                  CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG                    >  1:2545072/1‑71
                                                   ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC                   >  1:1037393/1‑71
                                                    TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCG                  <  1:2672828/71‑1
                                                    TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCG                  >  1:332236/1‑71
                                                    TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC                                   <  1:1549794/54‑1
                                                    TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                               <  1:4070306/42‑1
                                                     ATTACGTGGGTAGTATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAA                               <  1:4120197/57‑1
                                                     ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGT                 >  1:4256939/1‑71
                                                     ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC                   <  1:3565487/69‑1
                                                     ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAA                               <  1:1152598/57‑1
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT                >  1:1058841/1‑71
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCT                           >  1:1854058/1‑60
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCC                                  >  1:1167958/1‑53
                                                      TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA                                                >  1:2325894/1‑39
                                                        ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG               <  1:3814314/70‑1
                                                        ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG               <  1:177192/70‑1
                                                        ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG               <  1:1269023/70‑1
                                                            GGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA          >  1:103907/1‑71
                                                             tGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC                                   <  1:1842818/44‑1
                                                             GGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAT         <  1:2029518/71‑1
                                                               TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT       >  1:2499462/1‑71
                                                               TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT       <  1:3952751/71‑1
                                                               TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATT        >  1:1890412/1‑70
                                                                 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTA     >  1:2324467/1‑71
                                                                 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT                         >  1:1724434/1‑51
                                                                    TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA  >  1:2113836/1‑71
                                                                    TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA  >  1:1869255/1‑71
                                                                     CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAT         <  1:3561655/63‑1
                                                                      ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTA     <  1:325799/66‑1
                                                                                                                                           
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173495‑2173564
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA  >  W3110S.gb/3920278‑3920346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.