| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 107 (2.360) | 58/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 250 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 | gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1225805‑M2/1‑1 (MQ=255)gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1388506‑M2/1‑1 (MQ=255)gTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:3303845/1‑71 (MQ=255)gTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:3662288/71‑1 (MQ=255)gTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:3429979/1‑71 (MQ=255) ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2776464‑M2/69‑71 (MQ=255) tcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2228663‑M2/68‑70 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:1552617‑M2/67‑70 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:1056735‑M2/67‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:253891‑M2/67‑71 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:2236532‑M2/1‑70 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:435977‑M2/70‑2 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:1969566‑M2/70‑2 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca < 1:908312‑M2/5‑1 (MQ=255) gACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:2896878‑M2/1‑68 (MQ=255) acacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGGTCTGGATAGCAGAGAAGTGTACGaa < 1:394165/64‑1 (MQ=255) ccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg > 1:2362064‑M2/63‑69 (MQ=255) ccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg > 1:1662414‑M2/63‑69 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtcgatattacgtgggtaggatcACACATCtt > 1:4235232‑M2/62‑70 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:3745598‑M2/10‑4 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:3153730‑M2/62‑70 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:2654356‑M2/62‑70 (MQ=255) tttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta < 1:2022707‑M2/71‑9 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:1751037‑M2/3‑1 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:1435614‑M2/9‑3 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:3026180‑M2/59‑69 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta > 1:2728380‑M2/1‑61 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa > 1:1096064‑M2/55‑71 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:525174‑M2/54‑57 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:227718‑M2/54‑71 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:947663‑M2/54‑71 (MQ=255) ccTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:2738665‑M2/70‑15 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:1101327‑M2/49‑49 (MQ=255) aaacaagaacctcgcttaggcctgtctccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:4105658‑M2/49‑69 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGcc < 1:746591‑M2/16‑1 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:638445‑M2/24‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:2183556‑M2/1‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1698288‑M2/71‑24 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1002914‑M2/70‑24 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1779152‑M2/70‑24 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:2091031‑M2/28‑1 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1872064‑M2/55‑10 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:3091489‑M2/71‑28 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:3910784/1‑38 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGATCACtg > 1:2529141‑M2/1‑41 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcg < 1:1309529‑M2/70‑30 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccc < 1:3790363‑M2/52‑12 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:3414182‑M2/43‑4 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACTTc > 1:659293‑M2/37‑43 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCt > 1:4120641‑M2/37‑44 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatca > 1:2770619‑M2/36‑36 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:598520‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:1767722‑M2/1‑38 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:1126210‑M2/32‑1 (MQ=255) taggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:2191938‑M2/33‑66 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACttcgg > 1:2803368‑M2/32‑38 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:629231‑M2/32‑69 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtg > 1:3070186‑M2/1‑34 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:1078198‑M2/1‑34 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCttt < 1:1997301‑M2/10‑1 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag > 1:3605605‑M2/1‑32 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg < 1:2674911‑M2/62‑31 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:3296649‑M2/1‑32 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatattggacacgcggctaagtgag < 1:2259448‑M2/70‑40 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:1262516‑M2/70‑40 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:3349618‑M2/1‑31 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:4159935‑M2/35‑5 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTag > 1:1933907‑M2/25‑36 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:2925998‑M2/46‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:3237879‑M2/24‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTc < 1:2580455‑M2/49‑1 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:2094272‑M2/28‑1 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:732369‑M2/22‑69 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTc > 1:3974743‑M2/22‑70 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:2614190‑M2/71‑48 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa < 1:1603193‑M2/50‑1 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:1519843‑M2/21‑71 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:2497887‑M2/69‑48 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa < 1:1152598‑M2/40‑1 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc < 1:3565487‑M2/52‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:2325894‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa > 1:2632478‑M2/17‑56 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa > 1:4036733‑M2/17‑56 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc > 1:1167958‑M2/17‑53 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1543068‑M2/16‑70 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:1901655‑M2/1‑19 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:2451584‑M2/1‑18 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:3814314‑M2/56‑1 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:3566751‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1882982‑M2/1‑17 (MQ=255) gggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa > 1:103907‑M2/11‑71 (MQ=255) tgtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc < 1:1842818‑M2/36‑1 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:2029518‑M2/62‑1 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgc > 1:2551729‑M2/1‑12 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:38683‑M2/38‑1 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa > 1:1401103‑M2/3‑63 (MQ=255) aaCACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga > 1:476989‑M2/1‑5 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:4266792‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:3323716‑M2/71‑68 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:1019555‑M2/71‑68 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |