New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2855747	21 (0.450)	17 (0.370)	11/100	NT	31.0%	intergenic (‑285/‑2)	ygbA/mutS	hypothetical protein/methyl‑directed mismatch repair protein
	?	W3110S.gb	4124505 =	55 (1.210)					coding (1/837 nt)	dam	DNA adenine methylase

CCATTTAATATCAGGGAACCGGACATAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2855717‑2855747 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG  >  W3110S.gb/4124505‑4124573                                                                                                      taATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                                >  1:779844/3‑70  aATTTAATATCAGTAAGCCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG                                     >  1:842587/2‑64  aATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG                                     >  1:2185561/2‑64    TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGT                            <  1:2498356/71‑1    TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA                                             >  1:2976159/1‑54    TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT                                                           <  1:3009564/40‑1         TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG                                         <  1:2862287/53‑1              gtaAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCT                     <  1:2191481/65‑1               taAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT                 <  1:2559581/69‑1               taAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG                                     <  1:3304645/49‑1                 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA               >  1:2452176/1‑71                 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG                             <  1:2119432/57‑1                  ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT              <  1:2751914/71‑1                   CCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATG             <  1:3599795/71‑1                   CCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATG             <  1:2044336/71‑1                      GACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATA          <  1:3973386/71‑1                         ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG                                  >  1:1215903/1‑44                           AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                                <  1:3517334/44‑1                             CCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAT                          >  1:3036573/1‑48                               CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG  >  1:2634799/1‑70                               CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG                             <  1:2993808/43‑1                                                                                                      CCATTTAATATCAGGGAACCGGACATAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2855717‑2855747 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG  >  W3110S.gb/4124505‑4124573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.