| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2944576 | 69 (1.380) | 4 (0.090) | 3/88 | NT | 6.1% | intergenic (‑78/+161) | ygdL/mltA | conserved hypothetical protein/membrane‑bound lytic murein transglycosylase A |
| ? | W3110S.gb | 3866182 = | 64 (1.480) | intergenic (‑189/+41) | mtlD/mtlA | mannitol‑1‑phosphate dehydrogenase, NAD(P)‑binding/fused mannitol‑specific PTS enzyme IIABC components | |||||
CAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATC > W3110S.gb/2944506‑2944644 | cAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGC > 1:1707396‑M1/1‑71 (MQ=255)cAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGC > 1:4610701‑M1/1‑71 (MQ=255) aGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGcc > 1:1348615/1‑71 (MQ=255) aGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGC < 1:721158‑M1/70‑1 (MQ=255) gAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCt < 1:1778892/71‑1 (MQ=255) aaTTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTa < 1:1758086/71‑1 (MQ=255) aTTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:4605613/71‑1 (MQ=255) ttAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:657422/1‑71 (MQ=255) ttAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:1238045/1‑71 (MQ=255) aGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTc > 1:278236/1‑71 (MQ=255) gCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTg > 1:213085/1‑71 (MQ=255) aGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCt > 1:3505615/1‑67 (MQ=255) ttATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTc < 1:2306628/62‑1 (MQ=255) ttATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAatat < 1:1662949/71‑1 (MQ=255) tATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCaa > 1:4156054/1‑67 (MQ=255) aTCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCt > 1:1266771/1‑62 (MQ=255) ccTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGC < 1:3699706‑M1/46‑1 (MQ=255) cTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGa > 1:4385562/1‑71 (MQ=255) cTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGa < 1:42516/71‑1 (MQ=255) tCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACAt < 1:3624048/50‑1 (MQ=255) tCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACAt < 1:3553116/50‑1 (MQ=255) aCCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATaa > 1:2138458/1‑50 (MQ=255) aCCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGAttt > 1:3648944/1‑71 (MQ=255) aCCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGAttt > 1:1811559/1‑71 (MQ=255) cccTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTg < 1:1667026/71‑1 (MQ=255) ccTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATaa < 1:1477680/48‑1 (MQ=255) ccTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTg > 1:3310413/1‑70 (MQ=255) ccTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTg > 1:2513719/1‑70 (MQ=255) ccTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGc < 1:4071416/71‑1 (MQ=255) cTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCa > 1:1690520/1‑71 (MQ=255) tAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACAt > 1:4153919/1‑44 (MQ=255) aaCGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATg < 1:2490001/70‑1 (MQ=255) aaCGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATg < 1:286790/70‑1 (MQ=255) aaCGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGa < 1:682828/71‑1 (MQ=255) aCGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGc > 1:1102341/1‑66 (MQ=255) gCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGAttt < 1:3018018/71‑1 (MQ=255) cATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATAtttt > 1:106748/1‑55 (MQ=255) cATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTg < 1:3993555/71‑1 (MQ=255) cATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTg < 1:3802919/71‑1 (MQ=255) aTAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTg < 1:1143771/70‑1 (MQ=255) tAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTg < 1:2485461/69‑1 (MQ=255) tAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGt < 1:3148829/70‑1 (MQ=255) aaTGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCa > 1:1374860/1‑60 (MQ=255) aTGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCt > 1:368412/1‑40 (MQ=255) aTGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAgg > 1:3892279/1‑70 (MQ=255) aTGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGc < 1:3253047/71‑1 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACATAAc > 1:1215197/1‑35 (MQ=33) gCCTGATGCGCTACGCTTATCAGGCaattaaccccaccttctccatgtggagagggtgggattggattact > 1:3059885‑M1/1‑25 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCaattaaccccaccttctccatgtggagagggtggg > 1:3054486‑M1/1‑25 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGcc > 1:347455/1‑70 (MQ=255) ccTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCg < 1:3507068/70‑1 (MQ=255) cTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGa < 1:1013587/71‑1 (MQ=255) tGATGCGCTACGCTTATCAGGCCTACATAACTCCt < 1:2367375/35‑1 (MQ=255) tGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTg < 1:1017236/61‑1 (MQ=255) tGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGa < 1:4280726/70‑1 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATAACTCCTGCattatt < 1:4008038/42‑1 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATAtt < 1:3001646/42‑1 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGAtt < 1:313959/49‑1 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGt > 1:3296309/1‑61 (MQ=255) aTGCGCTACGCTTATCAGGCCTACGTAACTCCTGCAATATTTTGGAt > 1:1819844/1‑47 (MQ=255) aTGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGAt < 1:4591720/69‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGc > 1:2942624/1‑50 (MQ=255) tGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAg < 1:801178/71‑1 (MQ=255) gcgcTACGCTTATCAGGCaattaaccccaccttctccatgtggagagg < 1:353182‑M1/48‑31 (MQ=255) gcgcTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAg < 1:2148175/70‑1 (MQ=255) cgcTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGc < 1:798062/71‑1 (MQ=255) cgcTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGc < 1:3847845/71‑1 (MQ=255) gcTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCg < 1:1176489/71‑1 (MQ=255) cTACGCTTATCAGGCaattaaccccaccttctccatgtggagaggg < 1:901925‑M1/46‑32 (MQ=255) cTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGt > 1:1589094/1‑71 (MQ=255) aCGCTTATCAGGCCTACATAACTCCTGCAATAtttt > 1:3254004/1‑36 (MQ=255) aCGCTTATCAGGCCTACATAACTCCTGCAATAtttt > 1:2491747/1‑36 (MQ=255) ctcTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTg < 1:639268/49‑1 (MQ=255) cGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGtt < 1:1158893/69‑1 (MQ=255) cGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGtt < 1:1879301/69‑1 (MQ=255) cGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCa < 1:1784790/71‑1 (MQ=255) gCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTg < 1:3703181/50‑1 (MQ=255) gCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCAc < 1:2250469/71‑1 (MQ=255) ttATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCAcgc > 1:2231953/1‑71 (MQ=255) ttATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCAcgc > 1:1230425/1‑71 (MQ=255) ttATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCAcgc > 1:2964827/1‑71 (MQ=255) aTCAGGCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagtt < 1:198347‑M1/71‑65 (MQ=255) aTCAGGCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagtt < 1:203755‑M1/71‑65 (MQ=255) aTCAGGCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagtt < 1:4289292‑M1/71‑65 (MQ=255) aTCAGGCaattaaccccaccttctccatgtggagagggtgggattggattacttacg < 1:6440‑M1/57‑51 (MQ=255) aTCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCAcgcc < 1:2626699/70‑1 (MQ=255) tCAGGCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagttc > 1:1452690‑M1/1‑6 (MQ=255) tCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCAcgccgc < 1:1405538/71‑1 (MQ=255) aGGCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagttcc < 1:22492‑M1/70‑67 (MQ=255) aGGCaattaaccccaccttctccatgtggagagggtgggattggattacttacgac > 1:3238597‑M1/1‑4 (MQ=255) ggCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagttccag > 1:3500220‑M1/1‑3 (MQ=255) ggCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagttccag > 1:2813619‑M1/1‑3 (MQ=255) ggCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagttccag < 1:709128‑M1/71‑69 (MQ=255) ggCaattaaccccaccttctccatgtggagagggtgggattggattacttacgacctgccagcagttccag > 1:1279428‑M1/1‑3 (MQ=255) ggCaattaaccccaccttctccatgtggagagggtgggattggat > 1:579420‑M1/1‑3 (MQ=255) ccTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATa < 1:3340028/51‑1 (MQ=255) | CAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATC > W3110S.gb/2944506‑2944644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |