| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2944576 | 69 (1.380) | 4 (0.090) | 3/88 | NT | 6.1% | intergenic (‑78/+161) | ygdL/mltA | conserved hypothetical protein/membrane‑bound lytic murein transglycosylase A |
| ? | W3110S.gb | 3866182 = | 64 (1.480) | intergenic (‑189/+41) | mtlD/mtlA | mannitol‑1‑phosphate dehydrogenase, NAD(P)‑binding/fused mannitol‑specific PTS enzyme IIABC components | |||||
CTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTCCAGCAC > W3110S.gb/3866113‑3866252 | cTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:561104/1‑71 (MQ=255) aCAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt > 1:71905/1‑70 (MQ=255) cAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt < 1:1024422/70‑1 (MQ=255) cAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt < 1:917122/70‑1 (MQ=255) cAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt > 1:1344961/1‑70 (MQ=255) cAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt < 1:3907324/70‑1 (MQ=255) cAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTa < 1:2713621/71‑1 (MQ=255) aGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTaa > 1:2949713/1‑70 (MQ=255) gAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:3797159/1‑65 (MQ=255) gAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAAcc > 1:4095121/1‑71 (MQ=255) aCGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAAcccc < 1:1149054/71‑1 (MQ=255) aCGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAAcccc < 1:2548131/71‑1 (MQ=255) aCGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAAccc > 1:4559852/1‑70 (MQ=255) aCGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGACAAGCGTAGCGCATCAGGCAATTAAcccc < 1:1796951/71‑1 (MQ=255) gTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCAc > 1:1424603/1‑71 (MQ=255) aaaTTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTtc > 1:277446/1‑71 (MQ=255) aTTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt < 1:33860/57‑1 (MQ=255) aTTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt > 1:2302767/1‑56 (MQ=255) aTTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTtctc < 1:1266649/71‑1 (MQ=255) aTTCAACAAATTGTGATGCATCCCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt < 1:2611666/57‑1 (MQ=255) ttCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTtc > 1:2479362/1‑68 (MQ=255) caacaaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCa > 1:4470469/1‑70 (MQ=255) caacaaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCa < 1:4050084/70‑1 (MQ=255) aacaaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCt < 1:3492521/63‑1 (MQ=255) aacaaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtg < 1:230016/71‑1 (MQ=255) acaaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgt < 1:323726/71‑1 (MQ=255) acaaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgt > 1:4233095/1‑71 (MQ=255) caaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTtc > 1:2418729/1‑63 (MQ=255) caaATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgtg > 1:4517280/1‑71 (MQ=255) aaaTTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTtct > 1:253250/1‑63 (MQ=255) aaTTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGTCAATTAACCCCACCTTCTCCATGTGga < 1:132041/71‑1 (MQ=255) aaTTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGga < 1:2206360/71‑1 (MQ=255) aaTTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGga < 1:38853/71‑1 (MQ=255) aaTTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGga < 1:415247/71‑1 (MQ=255) aTTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgtg > 1:2611262/1‑68 (MQ=255) aTTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgtg > 1:1634744/1‑68 (MQ=255) ttGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTaa > 1:3576783/1‑49 (MQ=255) ttGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGgaga < 1:2525439/71‑1 (MQ=255) ttGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGgaga < 1:2578065/71‑1 (MQ=255) ttGTGATGCATACTGTAGGCCTGATAAGAGTAGCGCATCAGGCAATTAAc > 1:1500996/1‑50 (MQ=18) tgtgATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtg > 1:2542999/1‑64 (MQ=255) tgtgATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGagag > 1:3591136/1‑71 (MQ=255) tgtgATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGagag > 1:2597531/1‑71 (MQ=255) tgATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgtg < 1:517562/64‑1 (MQ=255) aTGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGt < 1:4451394/70‑1 (MQ=255) cATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAATCCCACCCTCTCCACATGGAGAAGGTggg < 1:139938/70‑1 (MQ=18) tCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGgtatt < 1:3950971/71‑1 (MQ=255) ccTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGggattg > 1:4338001/1‑71 (MQ=255) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTg > 1:1967682/1‑64 (MQ=255) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGggattg < 1:1683347/70‑1 (MQ=255) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGggattg > 1:1095332/1‑70 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGggattgga > 1:930665/1‑71 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgtg < 1:1779781/52‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGggattggat < 1:3698252/70‑1 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGga > 1:2583273/1‑52 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGga > 1:4522838/1‑52 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGggattggatt > 1:1203842/1‑69 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGAttac > 1:3508188/1‑71 (MQ=255) gcctgatgcgctacgcttatcaggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTggg > 1:3054486‑M2/26‑60 (MQ=255) gcctgatgcgctacgcttatcaggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGAttact > 1:3059885‑M2/26‑71 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGAttactta > 1:1864108/1‑71 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTgg < 1:681645/47‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGga > 1:1739989/1‑47 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACg < 1:505585/70‑1 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTAACCCCACCCTCTCCACATGGAGAAGGt < 1:2939574/52‑1 (MQ=21) tAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAt < 1:4222766/40‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGAc < 1:2756856/71‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGAc > 1:3153212/1‑71 (MQ=255) gcgctacgcttatcaggcAATTAACCCCACCTTCTCCATGTGGAGAgg < 1:353182‑M2/30‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTAACCCCACCTtctc > 1:1377114/1‑36 (MQ=255) aaGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAgg > 1:1942015/1‑48 (MQ=255) aaGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGa > 1:3853298/1‑69 (MQ=255) ctacgcttatcaggcAATTAACCCCACCTTCTCCATGTGGAGAggg < 1:901925‑M2/31‑1 (MQ=255) cGTAGCGCATCAGGCAATTAACCCCACCTTCTCCAtgt < 1:3126595/38‑1 (MQ=255) gTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAggg < 1:1915671/45‑1 (MQ=255) gTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGc > 1:4512132/1‑70 (MQ=255) tAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGga > 1:1828731/1‑39 (MQ=255) tAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGAttactt > 1:3786730/1‑60 (MQ=255) tAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCca < 1:927373/71‑1 (MQ=255) gcATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACg < 1:2781835/59‑1 (MQ=255) cATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGt < 1:1376206/71‑1 (MQ=255) atcaggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACg < 1:6440‑M2/50‑1 (MQ=255) atcaggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGtt < 1:203755‑M2/64‑1 (MQ=255) atcaggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGtt < 1:4289292‑M2/64‑1 (MQ=255) atcaggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGtt < 1:198347‑M2/64‑1 (MQ=255) tcaggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTc > 1:1452690‑M2/7‑71 (MQ=255) aggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGAc > 1:3238597‑M2/5‑56 (MQ=255) aggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTcc < 1:22492‑M2/66‑1 (MQ=255) ggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGggattggat > 1:579420‑M2/4‑45 (MQ=255) ggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTCCAg > 1:3500220‑M2/4‑71 (MQ=255) ggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTCCAg > 1:2813619‑M2/4‑71 (MQ=255) ggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTCCAg < 1:709128‑M2/68‑1 (MQ=255) ggcAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTCCAg > 1:1279428‑M2/4‑71 (MQ=255) aaTTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTCCAGCAc > 1:2128251/1‑71 (MQ=255) | CTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAACCCCACCTTCTCCATGTGGAGAGGGTGGGATTGGATTACTTACGACCTGCCAGCAGTTCCAGCAC > W3110S.gb/3866113‑3866252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |