| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 24 (1.290) | 18/100 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/566063‑566000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGAT < W3110S.gb/576913‑576844 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATT < 1:1557482/71‑1TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATT < 1:1425139/71‑1TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGAT < 1:709622/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACT < 1:312826/71‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGA > 1:1370390/1‑63 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACAC < 1:612042/68‑1 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGAT > 1:398821/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACAC < 1:850848/67‑1 GAGTTTACTCACTTAGCCCCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA < 1:395742/71‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACAC > 1:1608162/1‑53 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGC < 1:286136/70‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTGAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTC > 1:434820/1‑71 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGC > 1:218124/1‑69 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACAC < 1:45322/50‑1 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACAC < 1:1409511/50‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:240418/1‑51 ACTTAGCCGCGTGTCCACTATTGCTGGCTAAGATCAAGTGATTAACACTGA > 1:1530333/1‑51 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCA > 1:1589361/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACAC > 1:786701/1‑45 GCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGC < 1:1754675/49‑1 CGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAG < 1:1411352/71‑1 GTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAG > 1:1152711/1‑71 CCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGC < 1:1377757/46‑1 CACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:47333/1‑36 GTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCA < 1:443265/61‑1 TCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAA > 1:1032255/1‑44 CAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAA > 1:1133387/1‑55 CAAGTGATAAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAA > 1:214694/1‑55 AAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGAT > 1:759608/1‑71 AAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGAT > 1:978459/1‑71 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/566063‑566000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGAT < W3110S.gb/576913‑576844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |