| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 24 (1.290) | 18/100 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
ATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576844‑576981 | cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACt > 1:1522817‑M2/68‑70 (MQ=255)cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:1097528‑M2/68‑71 (MQ=255)cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:573289‑M2/68‑71 (MQ=255)atcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt > 1:978459‑M2/1‑70 (MQ=255)atcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt > 1:759608‑M2/1‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg < 1:114754‑M2/4‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGccc > 1:1113003‑M2/63‑70 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCaa > 1:883071‑M2/59‑68 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTgg > 1:1112138‑M2/56‑60 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTgg > 1:506467‑M2/56‑60 (MQ=255) ttGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTTATCACTtg > 1:214694‑M2/1‑53 (MQ=255) ttGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtg > 1:1133387‑M2/1‑53 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACg < 1:330466‑M2/19‑1 (MQ=255) tgctgctgcTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttac < 1:443265‑M2/61‑10 (MQ=255) ctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggac > 1:1152711‑M2/1‑47 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTg < 1:812479‑M2/27‑1 (MQ=255) ctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacg < 1:1411352‑M2/71‑28 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAgg < 1:350391‑M2/32‑1 (MQ=255) ttGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtga > 1:1032255‑M2/1‑41 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtg > 1:595758‑M2/38‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtg < 1:1650520‑M2/34‑1 (MQ=255) ttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtgt > 1:1478542‑M2/35‑69 (MQ=255) tggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaa > 1:1589361‑M2/1‑37 (MQ=255) gAGCAATTGCTATAGCATCAGTGTTAATCACTtgatctcacccagcaatagtggacacgcggctaagtgag > 1:434820‑M2/1‑32 (MQ=255) gCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:286136‑M2/70‑41 (MQ=255) gCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgag > 1:218124‑M2/1‑30 (MQ=255) gtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTc > 1:1746106‑M2/27‑62 (MQ=255) tgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatac > 1:1649867‑M2/26‑71 (MQ=255) tGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacggggctaagtgagtaaactc < 1:395742‑M2/71‑47 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtgg < 1:1377757‑M2/46‑23 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGaa > 1:689774‑M2/22‑51 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGaa > 1:465301‑M2/22‑51 (MQ=255) atattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccatac < 1:254913‑M2/51‑1 (MQ=255) attacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCt > 1:393500‑M2/19‑58 (MQ=255) attacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACa > 1:153519‑M2/19‑70 (MQ=255) attacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACa > 1:662002‑M2/19‑70 (MQ=255) ttacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACaa < 1:653632‑M2/53‑1 (MQ=255) ttacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACaa < 1:742593‑M2/53‑1 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggc < 1:1754675‑M2/49‑32 (MQ=255) aTCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga > 1:398821‑M2/1‑16 (MQ=255) tCAGTGTTAATCACTtgatcttagccagcaatagtggacacgcggctaagt > 1:1530333‑M2/1‑15 (MQ=255) tCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagt > 1:240418‑M2/1‑15 (MQ=255) tCAGTGTTAATCACTtgatcttacccagcaatagtg > 1:47333‑M2/1‑15 (MQ=255) aGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:312826‑M2/71‑59 (MQ=255) gtgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:612042‑M2/68‑57 (MQ=255) gtgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga < 1:850848‑M2/67‑56 (MQ=255) gtgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1608162‑M2/1‑12 (MQ=255) gtgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtga < 1:45322‑M2/50‑39 (MQ=255) gtgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtga < 1:1409511‑M2/50‑39 (MQ=255) gtgtTAATCACTtgatcttacccagcaatagtggacacgcggcta > 1:786701‑M2/1‑12 (MQ=255) ggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgttg > 1:304492‑M2/7‑70 (MQ=255) atcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg < 1:171868‑M2/67‑1 (MQ=255) aaTCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1425139‑M2/71‑65 (MQ=255) aaTCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1557482‑M2/71‑65 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtgt < 1:1324441‑M2/68‑1 (MQ=255) aTCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:709622‑M2/70‑65 (MQ=255) tCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:1370390‑M2/1‑5 (MQ=255) aACTGGCCCAAGTGGTAACGATTGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTAt > 1:1448482‑M2/2‑71 (MQ=255) cTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTgg > 1:66401/1‑64 (MQ=255) cTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATg > 1:280022/1‑70 (MQ=255) tGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTgg > 1:913290/1‑63 (MQ=255) | ATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576844‑576981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |