| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 24 (1.290) | 21 (1.230) | 15/92 | NT | 53.8% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 14 (0.820) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
AGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTA > W3110S.gb/713311‑713440 | cacacgtaaaaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataat < 1:1004822‑M1/2‑1 (MQ=255)cacacgtaaaaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataat > 1:1320387‑M1/70‑71 (MQ=255) acacgtaaaaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataAtt < 1:1088109‑M1/3‑1 (MQ=255) gtaaaaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGc < 1:1361119‑M1/7‑1 (MQ=255) taaaaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCt > 1:1336143‑M1/64‑71 (MQ=255) aaaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTaa > 1:189393‑M1/62‑71 (MQ=255) aaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTc > 1:516911‑M1/61‑64 (MQ=255) aaaggtggacgaactgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCt < 1:432819‑M1/8‑1 (MQ=255) aGCCAGGCTTGACGCTATCCGCTGCAGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGaca > 1:674773/1‑71 (MQ=255) gCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGacac < 1:879825/71‑1 (MQ=255) gCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGacac < 1:1074674/71‑1 (MQ=255) cTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTaa < 1:335876/60‑1 (MQ=255) gactcctggtttgtacaaagccagcagtcgtttcacccgcgaaaaaataATTCAGCTAAGAcactgcactg < 1:691195‑M1/22‑1 (MQ=255) actgctggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGAcactgcactg < 1:849542‑M1/22‑1 (MQ=255) gCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTAt < 1:894333/46‑1 (MQ=255) tggctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGAt < 1:191657‑M1/25‑1 (MQ=255) gctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTaa > 1:1525720‑M1/42‑69 (MQ=255) ctttgtacaaaccaggagtcgtttcacccgcgaaaaaataATTc > 1:986606‑M1/41‑44 (MQ=255) ccGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGa > 1:1066901/1‑51 (MQ=255) ccGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGa > 1:522662/1‑51 (MQ=255) cGCTGCCGGGATTTATTCATATTCTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATg > 1:94240/1‑70 (MQ=255) cGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATg > 1:1668229/1‑70 (MQ=255) tgtacaaaccaggagtcgtttcacccgcgaaaaaataa < 1:83964‑M1/1‑1 (MQ=255) tgtacaaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGa < 1:776531‑M1/24‑1 (MQ=255) gCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGaa < 1:1369743/71‑1 (MQ=255) tGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGaaaa > 1:904596/1‑71 (MQ=255) ccGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACg < 1:1082983/71‑1 (MQ=255) caaaccaggagtcgtttcacccgcgaaaaaataAtt < 1:140103‑M1/3‑1 (MQ=255) aaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTaa < 1:829688‑M1/10‑1 (MQ=255) aaaccaggagtcgtttcacccgcgaaaaaataATTCAGCTaa < 1:443783‑M1/10‑1 (MQ=255) aaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGa < 1:1369480‑M1/12‑1 (MQ=255) aaccaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGAt > 1:1184457‑M1/32‑71 (MQ=255) ggATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGa < 1:1186974/42‑1 (MQ=255) ggATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGa < 1:493418/42‑1 (MQ=255) ggATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGa < 1:174891/42‑1 (MQ=255) accaggagtcgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGa > 1:155640‑M1/31‑69 (MQ=255) ttATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAg > 1:824659/1‑71 (MQ=255) ttATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAg > 1:529128/1‑71 (MQ=255) tATTCATATACTCCTGGTGACTTGTATTCAGCTaa > 1:241270/1‑35 (MQ=255) tATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGaa > 1:1000768/1‑59 (MQ=255) aTTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGtt > 1:1363392/1‑71 (MQ=255) cgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgat < 1:1286553‑M1/50‑1 (MQ=255) cgtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgat < 1:163004‑M1/50‑1 (MQ=255) gtttcacccgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAg > 1:88762‑M1/21‑49 (MQ=255) tataCTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatga < 1:1665152/71‑1 (MQ=255) ataCTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatgat > 1:1143278/1‑71 (MQ=255) taCTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatgat > 1:831619/1‑70 (MQ=255) aCTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatgatg > 1:970580/1‑70 (MQ=255) cgcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGaaaa < 1:1738908‑M1/36‑1 (MQ=255) gcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAActc < 1:417820‑M1/59‑1 (MQ=255) gcgaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTCAAGTtgat < 1:437933‑M1/50‑1 (MQ=255) gagaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAActct > 1:593345‑M1/12‑71 (MQ=255) ggCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTa > 1:815445/1‑71 (MQ=255) gaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatg < 1:1754331‑M1/51‑1 (MQ=255) gaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTa < 1:1429794‑M1/61‑1 (MQ=255) gaaaaaataATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTa < 1:378147‑M1/61‑1 (MQ=255) ttGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtga < 1:898898/53‑1 (MQ=255) ttGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtga < 1:1630547/53‑1 (MQ=255) taATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGaa > 1:120270‑M1/3‑46 (MQ=255) gTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAAc > 1:1549918/1‑59 (MQ=255) gTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAAc > 1:1248916/1‑59 (MQ=255) ATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatg < 1:274531‑M1/51‑1 (MQ=255) ATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTtgatg < 1:1425429‑M1/51‑1 (MQ=255) | AGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTA > W3110S.gb/713311‑713440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |