| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 59 (1.110) | 58 (1.400) +CGCGTACAACT |
28/76 | NT | 49.9% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 91 (1.710) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA > W3110S.gb/236044‑236112 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC < 1:1229384/71‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:2313792/71‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACT > 1:3864770/1‑70 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC > 1:1674949/1‑71 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT > 1:239423/1‑71 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC > 1:1752657/1‑70 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG < 1:1769573/69‑1 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT < 1:2439456/71‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:3900664/71‑1 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAG < 1:4691028/61‑1 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAG < 1:2886103/61‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC > 1:4995736/1‑61 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:1941575/70‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:5045624/1‑71 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:1857780/67‑1 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1619141/71‑1 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:1757174/1‑67 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:780572/71‑1 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:1246127/49‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:4798131/70‑1 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT < 1:3294966/71‑1 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT < 1:44928/71‑1 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGAC > 1:1305339/1‑53 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:1008300/1‑46 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:1846966/1‑41 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1683414/68‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:4587561/68‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:4630499/68‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1629394/68‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1024465/68‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT < 1:1642141/52‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC > 1:4951786/1‑36 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC > 1:2041140/1‑36 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC > 1:1398009/1‑36 ACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:900505/67‑1 CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:32545/60‑1 CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3089893/60‑1 TTCTCCATACCCGTTTTTTTGGCCGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:1752539/1‑64 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:2302686/1‑70 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:373155/70‑1 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:3501628/70‑1 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC > 1:2244165/1‑52 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC > 1:157074/1‑52 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:1303637/57‑1 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:2956467/57‑1 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT‑AATGACCGCTATG < 1:790082/56‑1 CCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:2945963/1‑71 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC > 1:3257704/1‑71 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:4722922/68‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC < 1:4234880/58‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:2727436/41‑1 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:4367159/1‑69 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:684776/1‑41 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:4530666/1‑41 CGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2715635/1‑67 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT < 1:1000914/71‑1 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT < 1:978592/71‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT < 1:2883955/70‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT < 1:1812151/70‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:5143874/1‑62 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:1714285/1‑62 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:2685055/44‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:3509547/1‑37 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:2349739/36‑1 TTTTTGGACGTGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1827782/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1471898/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:5130853/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1172493/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:3610513/1‑71 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC < 1:4676463/70‑1 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC < 1:753752/70‑1 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC < 1:2309022/70‑1 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:4604531/71‑2 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:238836/71‑2 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:4990344/71‑2 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:3571543/71‑2 GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC > 1:4886509/1‑71 GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC > 1:4296734/1‑71 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:40284/66‑3 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACag > 1:4759323/1‑68 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:2673899/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:3621451/1‑70 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:4210388/1‑70 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACG < 1:135677/50‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:2270398/44‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:4350748/44‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:434343/44‑1 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:2787218/1‑69 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:2430054/1‑69 AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAAC < 1:4673971/71‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA < 1:4186270/71‑1 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA > W3110S.gb/236044‑236112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |