New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 70061 =59 (1.110)58 (1.400)
+CGCGTACAACT
28/76 NT 49.9% intergenic (‑13/‑326) araB/araC L‑ribulokinase/DNA‑binding transcriptional dual regulator
?W3110S.gb 236044 = 91 (1.710)intergenic (‑42/‑23) rnhA/dnaQ ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit

AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70130‑70061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA  >  W3110S.gb/236044‑236112
                                                                      |||||||||||                                                                     
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC                                                                                 <  1:1229384/71‑1
           TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC                                                                      <  1:2313792/71‑1
           TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACT                                                                       >  1:3864770/1‑70
                CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC                                                                 >  1:1674949/1‑71
                 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT                                                                >  1:239423/1‑71
                 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC                                                                 >  1:1752657/1‑70
                    ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG                                                               <  1:1769573/69‑1
                      GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT                                                           <  1:2439456/71‑1
                       CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA                                                          <  1:3900664/71‑1
                        TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAG                                                                   <  1:4691028/61‑1
                        TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAG                                                                   <  1:2886103/61‑1
                          TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC                                                                 >  1:4995736/1‑61
                           TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       <  1:1941575/70‑1
                            TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA                                                     >  1:5045624/1‑71
                              TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       <  1:1857780/67‑1
                                GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                                 <  1:1619141/71‑1
                                GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA                                                     >  1:1757174/1‑67
                                 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT                                                <  1:780572/71‑1
                                 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC                                                                      <  1:1246127/49‑1
                                  AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT                                                <  1:4798131/70‑1
                                   ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT                                              <  1:3294966/71‑1
                                   ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT                                              <  1:44928/71‑1
                                      CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGAC                                                             >  1:1305339/1‑53
                                      CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA                                                                    >  1:1008300/1‑46
                                      CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA                                                                         >  1:1846966/1‑41
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           <  1:1683414/68‑1
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           <  1:4587561/68‑1
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           <  1:4630499/68‑1
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           <  1:1629394/68‑1
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           <  1:1024465/68‑1
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT                                                           <  1:1642141/52‑1
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC                                                                           >  1:4951786/1‑36
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC                                                                           >  1:2041140/1‑36
                                         TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC                                                                           >  1:1398009/1‑36
                                          ACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           <  1:900505/67‑1
                                           CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                                 <  1:32545/60‑1
                                           CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                                 <  1:3089893/60‑1
                                               TTCTCCATACCCGTTTTTTTGGCCGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA                                         >  1:1752539/1‑64
                                                TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  >  1:2302686/1‑70
                                                TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  <  1:373155/70‑1
                                                TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  <  1:3501628/70‑1
                                                TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC                                                    >  1:2244165/1‑52
                                                TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC                                                    >  1:157074/1‑52
                                                  TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG                                             <  1:1303637/57‑1
                                                  TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG                                             <  1:2956467/57‑1
                                                  TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAATGACCGCTATG                                             <  1:790082/56‑1
                                                   CCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA                              >  1:2945963/1‑71
                                                    CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC                             >  1:3257704/1‑71
                                                    CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA                                <  1:4722922/68‑1
                                                      TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC                                        <  1:4234880/58‑1
                                                      TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA                                                         <  1:2727436/41‑1
                                                        CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                           >  1:4367159/1‑69
                                                        CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       >  1:684776/1‑41
                                                        CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       >  1:4530666/1‑41
                                                          CGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                           >  1:2715635/1‑67
                                                           GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT                      <  1:1000914/71‑1
                                                           GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT                      <  1:978592/71‑1
                                                            TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT                      <  1:2883955/70‑1
                                                            TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT                      <  1:1812151/70‑1
                                                            TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA                              >  1:5143874/1‑62
                                                            TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA                              >  1:1714285/1‑62
                                                            TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT                                                <  1:2685055/44‑1
                                                            TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       >  1:3509547/1‑37
                                                             TTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       <  1:2349739/36‑1
                                                              TTTTTGGACGTGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                   >  1:1827782/1‑71
                                                              TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                   >  1:1471898/1‑71
                                                              TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                   >  1:5130853/1‑71
                                                              TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                   >  1:1172493/1‑71
                                                              TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                   >  1:3610513/1‑71
                                                                 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC                 <  1:4676463/70‑1
                                                                 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC                 <  1:753752/70‑1
                                                                 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC                 <  1:2309022/70‑1
                                                                    GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc             <  1:4604531/71‑2
                                                                    GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc             <  1:238836/71‑2
                                                                    GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc             <  1:4990344/71‑2
                                                                    GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc             <  1:3571543/71‑2
                                                                       GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC          >  1:4886509/1‑71
                                                                       GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC          >  1:4296734/1‑71
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct            <  1:40284/66‑3
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACag        >  1:4759323/1‑68
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc       <  1:2673899/71‑2
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG        >  1:3621451/1‑70
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG        >  1:4210388/1‑70
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACG                            <  1:135677/50‑1
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  <  1:2270398/44‑1
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  <  1:4350748/44‑1
                                                                          TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  <  1:434343/44‑1
                                                                           ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc       >  1:2787218/1‑69
                                                                           ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc       >  1:2430054/1‑69
                                                                             AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAAC    <  1:4673971/71‑1
                                                                               CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA  <  1:4186270/71‑1
                                                                      |||||||||||                                                                     
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70130‑70061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA  >  W3110S.gb/236044‑236112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.