| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 59 (1.110) | 58 (1.400) +CGCGTACAACT |
28/76 | NT | 49.9% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 91 (1.710) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 195 total aligned reads displayed.
TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 | tcctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:2313792‑M2/1‑1 (MQ=255) ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACATCCTGTAATAGAATCGAACTGTAAAACGAc > 1:3212613/1‑69 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:1674949‑M2/66‑71 (MQ=255) ctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:1752657‑M2/65‑70 (MQ=255) ctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCt > 1:239423‑M2/65‑71 (MQ=255) aaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg < 1:3610277/71‑1 (MQ=255) aaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg < 1:1311609/71‑1 (MQ=255) aaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg > 1:4258521/1‑70 (MQ=255) acgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTg < 1:1769573‑M2/8‑1 (MQ=255) aTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:632040/68‑1 (MQ=255) ttCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACa > 1:1011752/1‑70 (MQ=255) ttCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACa > 1:1881787/1‑70 (MQ=255) ttCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACa > 1:1828566/1‑70 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:3900664‑M2/13‑1 (MQ=255) tttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAg < 1:4691028‑M2/4‑1 (MQ=255) cTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:1640527/70‑1 (MQ=255) tttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:4995736‑M2/56‑61 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:2854098/68‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:4108851/70‑1 (MQ=255) cTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa < 1:4170771/71‑1 (MQ=255) tGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:458510/65‑1 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTc < 1:1093539/56‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:1619141‑M2/22‑1 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt > 1:3016214/1‑55 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc > 1:855406/1‑70 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc > 1:4732641/1‑70 (MQ=255) aactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCt < 1:4798131‑M2/23‑1 (MQ=255) aGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa < 1:4468841/70‑1 (MQ=255) gCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATg < 1:3362197/71‑1 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGAc > 1:1305339‑M2/44‑53 (MQ=255) tctcTGGTAGACTTCCTGTAATTTAATCGAACTGTAAAACGACAAGTCTGACATa < 1:3065105/55‑1 (MQ=255) tctcTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc < 1:1268435/43‑1 (MQ=255) tctcTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACaa > 1:2005323/1‑45 (MQ=255) ctctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACAt < 1:5061295/53‑1 (MQ=255) ctctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:2308227/54‑1 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:1352566/1‑71 (MQ=255) actgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:900505‑M2/28‑1 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGc < 1:784704/67‑1 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTg > 1:3492829/1‑71 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:3089893‑M2/22‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACa > 1:3003161/1‑38 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1737125/70‑1 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:3501628‑M2/37‑1 (MQ=255) tccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATg < 1:2956467‑M2/26‑1 (MQ=255) tccatacccgtttttttggacgcgtacaactCAAGTCTGACAT‑AATGACCGCTATg < 1:790082‑M2/25‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCt < 1:3243247/53‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:2214454/1‑71 (MQ=255) tCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaaa > 1:580169/1‑44 (MQ=255) tCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCg < 1:990126/50‑1 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:4530666‑M2/26‑41 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:4367159‑M2/26‑69 (MQ=255) cgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:2715635‑M2/24‑67 (MQ=255) gtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:1000914‑M2/49‑1 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:2358261/1‑58 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGa < 1:494873/70‑1 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGa < 1:3295135/70‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:3509547‑M2/22‑37 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:5143874‑M2/22‑62 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:1714285‑M2/22‑62 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:2883955‑M2/49‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:1812151‑M2/49‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:1141353/58‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1770115/1‑65 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAAt < 1:2349739‑M2/16‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1172493‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1471898‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATaaaa > 1:1462327/1‑34 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:253375/1‑49 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa > 1:1553124/1‑58 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:4516026/1‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:819847/1‑71 (MQ=255) gAATAGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:3255971/1‑49 (MQ=255) aaTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt < 1:2082159/70‑1 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:753752‑M2/54‑1 (MQ=255) gAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:2114854/1‑50 (MQ=255) gAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:2383736/70‑1 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc < 1:3571543‑M2/58‑2 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc < 1:4604531‑M2/58‑2 (MQ=255) aaCTGTAAAACGACAAGTCTGACATAAATGACCGCTATg < 1:2898209/39‑1 (MQ=255) aaCTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGa < 1:2802552/71‑1 (MQ=255) tGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTac < 1:3775139/50‑1 (MQ=255) gcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAc > 1:4886509‑M2/11‑71 (MQ=255) gcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAc > 1:4296734‑M2/11‑71 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:2270398‑M2/37‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:434343‑M2/37‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCtcgct < 1:40284‑M2/59‑3 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCtacag > 1:4759323‑M2/8‑68 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:2673899‑M2/64‑2 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCg > 1:3621451‑M2/8‑70 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCg > 1:4210388‑M2/8‑70 (MQ=255) aaaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGa > 1:3276291/1‑65 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:2787218‑M2/7‑69 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:2430054‑M2/7‑69 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa > 1:439151/1‑70 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAac < 1:4673971‑M2/67‑1 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:100163/1‑71 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCg < 1:3126864/58‑1 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCg < 1:1015457/58‑1 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAaccacc > 1:3724292/1‑71 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAaccacc > 1:4643843/1‑71 (MQ=255) | TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |