New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 120938225 (0.470)16 (0.450) 11/66 NT 50.1% coding (305/630 nt) ycfK hypothetical protein
?W3110S.gb = 1211179 15 (0.420)pseudogene (54/537 nt) stfE ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment

CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1209297‑1209382
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGC  <  W3110S.gb/1211179‑1211110
                                                                                                                                                            
CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT                                                                                       >  1:250651/1‑71
 TGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                      >  1:3228219/1‑71
              GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG                                                                         >  1:2937035/1‑71
              GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGCCTCTCGAAAACCTTGGTTTGGGAGAAG                                                                         >  1:4184441/1‑71
                   CGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                          >  1:168815/1‑65
                   CGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                          >  1:1719392/1‑65
                   CGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                          >  1:200065/1‑65
                     TTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT                                                                                 <  1:4651335/56‑1
                     TTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT                                                                                 <  1:4366846/56‑1
                       TGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG                                                                               >  1:2551896/1‑56
                             TATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTG                                                          <  1:1335740/71‑1
                               TCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGATAAGGCTCTGCATTACCTGT                                                         <  1:1545077/70‑1
                                CAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGG                                                                                    >  1:2196849/1‑42
                                 AAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGG                                                      >  1:191405/1‑71
                                  AATCGGATGGCACTGTGCAAACGTCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGT                                                     <  1:455001/71‑1
                                  AATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGT                                                     <  1:1010215/71‑1
                                    TCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT                                                   >  1:2027388/1‑71
                                               TGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCT                                                           <  1:3130044/52‑1
                                               TGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG                                                                        <  1:2380077/39‑1
                                                       CGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGC                                                                  >  1:4072764/1‑37
                                                           TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGT                                        >  1:4410652/1‑59
                                                            CTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGG                                                      >  1:2492131/1‑44
                                                            CTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGG                                                      >  1:3492298/1‑44
                                                            CTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGG                                                      >  1:3529870/1‑44
                                                              CGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTC                         >  1:3071985/1‑71
                                                              CGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTC                         >  1:2059534/1‑71
                                                               GAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCC                        >  1:160883/1‑71
                                                               GAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCC                        >  1:166925/1‑71
                                                                     CTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAAC                  <  1:3145909/71‑1
                                                                        GGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAG                <  1:2604413/70‑1
                                                                        GGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAG                <  1:746657/70‑1
                                                                         GTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGC              <  1:2644504/71‑1
                                                                                AGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAG                <  1:3012068/62‑1
                                                                                     GCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGC  <  1:359962/71‑1
                                                                                     GCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGC  <  1:4814699/71‑1
                                                                                     GCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG        <  1:4654557/65‑1
                                                                                                                                                            
CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1209297‑1209382
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGC  <  W3110S.gb/1211179‑1211110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.