| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 25 (0.470) | 16 (0.450) | 11/66 | NT | 50.1% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 15 (0.420) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT > W3110S.gb/1209320‑1209452 | agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:2440919‑M1/24‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:2374700/71‑1 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt < 1:3296047‑M1/25‑1 (MQ=255) aggaatgatgccatttgcttattatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:2439819‑M1/45‑71 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg < 1:1335740‑M1/71‑15 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc > 1:666297‑M1/41‑71 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc > 1:507095‑M1/41‑71 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:2318719/1‑70 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:3207542/1‑70 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGATAAGGctctgcattacctgt < 1:1545077‑M1/70‑16 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 1:4925817‑M1/33‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 1:3258607‑M1/33‑1 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:191405‑M1/1‑53 (MQ=255) aaTCGGATGGCACTGTGCAAACGTCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt < 1:455001‑M1/71‑20 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt < 1:1010215‑M1/71‑20 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt > 1:2027388‑M1/1‑50 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc < 1:1136004/71‑1 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 1:1992690/70‑1 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 1:997687/70‑1 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:310112‑M1/40‑1 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:3210876‑M1/29‑70 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:2004570‑M1/25‑50 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:3706089‑M1/25‑70 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:240663/45‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:2708692‑M1/24‑71 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct < 1:3130044‑M1/52‑14 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:2380077‑M1/39‑1 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:4888717‑M1/28‑1 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:1687349/69‑1 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg > 1:3370098‑M1/22‑70 (MQ=255) tttcttcattttcataaacgTTGGTTTGGGAGAAGGa > 1:4478068‑M1/21‑37 (MQ=255) tttcttcattttcataaacgTTGGTTTGGGAGAAGGa > 1:449820‑M1/21‑37 (MQ=255) tttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:3673112‑M1/36‑1 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACt < 1:4286673/44‑1 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg > 1:4062645/1‑71 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg > 1:1468738/1‑71 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAAGCAGCAACGGCTACATTAGGACg > 1:3737004/1‑71 (MQ=255) cttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:1713332‑M1/44‑1 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 1:982716/1‑67 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc < 1:2751216‑M1/55‑1 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc > 1:4072764‑M1/1‑31 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:3987880‑M1/46‑1 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg < 1:2800011‑M1/52‑1 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:784882‑M1/58‑1 (MQ=255) tctcGAAAACCTTGGTTTTGGAGAAGGAGCAAAACTCAATgcagc < 1:865812/45‑1 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt > 1:4410652‑M1/1‑27 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:3827009/45‑1 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:3008682/45‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt < 1:1195335‑M1/60‑1 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:3492298‑M1/1‑26 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:2492131‑M1/1‑26 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:3529870‑M1/1‑26 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:5079282/1‑71 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:3909464/1‑71 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:577920/43‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAAAAGGAGCAAAACTCAATgcagc < 1:1260474/43‑1 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactc > 1:2059534‑M1/1‑24 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactc > 1:3071985‑M1/1‑24 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc > 1:166925‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc > 1:160883‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:329393/41‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:2806473/1‑49 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:1183730/68‑1 (MQ=255) aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:1235094/1‑41 (MQ=255) aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:4777554/1‑41 (MQ=255) aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:2005168/1‑41 (MQ=255) cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaac < 1:3145909‑M1/71‑55 (MQ=255) TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat > 1:3987610‑M1/1‑70 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag < 1:2604413‑M1/70‑57 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag < 1:746657‑M1/70‑57 (MQ=255) gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggc < 1:2644504‑M1/71‑59 (MQ=255) GTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg < 1:4976351‑M1/71‑1 (MQ=255) GTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg < 1:4950285‑M1/71‑1 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:2698614‑M1/1‑59 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:3488808‑M1/70‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:3468383‑M1/70‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:4605235‑M1/70‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:4674048‑M1/70‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:1263970‑M1/70‑1 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:1050813‑M1/1‑71 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:1395734‑M1/1‑39 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt < 1:868884‑M1/70‑1 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag < 1:3012068‑M1/62‑57 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:3495640‑M1/1‑51 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg < 1:4358780‑M1/64‑1 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 1:1435420‑M1/1‑71 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:60384‑M1/52‑1 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:1819448‑M1/52‑1 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:4102033‑M1/1‑65 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTgg > 1:3459679‑M1/1‑71 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgc < 1:4814699‑M1/71‑71 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgc < 1:359962‑M1/71‑71 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctg < 1:4654557‑M1/65‑65 (MQ=255) GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:1885312‑M1/1‑64 (MQ=255) | TGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT > W3110S.gb/1209320‑1209452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |