| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 2 (0.040) | 37 (0.720) | 24/94 | NT | 95.1% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
GCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2018514‑2018583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT < W3110S.gb/2521059‑2520990 GCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCA > 1:2367315/1‑71GCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCA > 1:1469814/1‑71 CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCA > 1:872970/1‑70 CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAC < 1:3771621/68‑1 AACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATA < 1:2220087/71‑1 gttGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGC > 1:4815662/4‑71 GTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGC > 1:5093025/1‑71 ATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTA < 1:4470183/71‑1 ATATGCTCGGCGCTACCTTAAGTTTGCACGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT < 1:2547826/70‑1 TATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT > 1:1592381/1‑69 TGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGG < 1:3725252/71‑1 TGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGG < 1:3731121/71‑1 CTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGT > 1:520460/1‑71 TCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTT > 1:3405226/1‑71 TCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGAACCCACCAT < 1:4483463/52‑1 GGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTG < 1:1004493/70‑1 GGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTG > 1:3131299/1‑70 GCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACC < 1:2423054/71‑1 GCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAAC > 1:2797576/1‑70 GCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAAC > 1:2255223/1‑70 CCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCT > 1:3600741/1‑71 CTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTG < 1:3176169/71‑1 AGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:2641423/70‑1 AGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:1012262/70‑1 GTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAA < 1:1458012/59‑1 GTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAG > 1:3622433/1‑40 TTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACC > 1:2221275/1‑59 TTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAA > 1:1351559/1‑37 GCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:2164258/70‑1 GCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:733069/70‑1 CATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:3303809/69‑1 GCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCC > 1:1269200/1‑71 GCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG < 1:3333354/71‑1 GCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGG < 1:2407662/41‑1 GCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGG < 1:4650722/41‑1 GCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGG < 1:1729354/41‑1 GCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTG > 1:3078661/1‑71 GCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTG > 1:1743292/1‑71 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:1484691/53‑1 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:4943645/53‑1 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:3869093/53‑1 TGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCT > 1:954090/1‑71 TGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCAT > 1:4306707/1‑45 GCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGC > 1:1151616/1‑68 CGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCAT > 1:3724884/1‑43 CACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA > 1:2481396/1‑40 ACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGC > 1:2916923/1‑71 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC > 1:4087227/1‑71 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < 1:2802681/71‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < 1:2885761/71‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGA > 1:2246902/1‑67 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAA > 1:2090021/1‑62 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAA > 1:2815238/1‑62 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA < 1:4168960/37‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA < 1:4319064/37‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA < 1:3670689/37‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA < 1:3093430/37‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:501078/36‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG < 1:763986/36‑1 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT > 1:2192054/1‑71 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT > 1:4980450/1‑71 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT > 1:1278519/1‑71 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGAC < 1:2248002/43‑1 GCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2018514‑2018583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCT < W3110S.gb/2521059‑2520990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |