| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 55 (1.050) | 33/96 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 104 total aligned reads displayed.
TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172376‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC < W3110S.gb/3920281‑3920213 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:3068007/71‑1TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:892297/70‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCGCTATTGCTGGGTAAGATCAGTGa > 1:2573010/1‑70 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGa < 1:582266/71‑2 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGa > 1:3220816/1‑70 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG < 1:1079551/70‑1 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT > 1:1019634/1‑71 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT > 1:4395297/1‑71 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT > 1:3727358/1‑71 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT > 1:3148299/1‑71 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT > 1:1594861/1‑71 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:2546645/71‑1 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:3402616/71‑1 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:3784922/1‑65 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG > 1:2688120/1‑70 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:4350580/71‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:41799/71‑1 TCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACA > 1:4393523/1‑71 CACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC > 1:3921102/1‑71 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:4634878/1‑59 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:1711932/1‑59 CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:1010682/1‑59 CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:2990276/1‑59 CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:354564/1‑59 CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:4483330/1‑59 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT > 1:2594850/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:1104213/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:4238470/1‑56 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:2072558/1‑56 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:4720159/1‑56 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:2651493/1‑56 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:4264579/55‑1 GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAG < 1:3645729/71‑1 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT > 1:1481166/1‑58 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:5036290/1‑71 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA > 1:4782864/1‑69 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:2570268/1‑70 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:586486/70‑1 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:3816225/70‑1 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:3809908/70‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACA > 1:110072/1‑47 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:3963455/1‑37 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT < 1:3511738/71‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT < 1:4499671/71‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT > 1:4245620/1‑50 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT > 1:2606378/1‑50 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:1887970/35‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:682278/35‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:1455159/35‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACTATGGTTA > 1:4283565/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG > 1:5039965/1‑36 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG > 1:2449691/1‑36 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:2329553/1‑35 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:4033238/1‑35 TAGCCGCGTGTCCACTATTGCTGGGTAAGAACAGTG > 1:1132778/1‑36 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTT < 1:3380721/69‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTAC > 1:4093307/1‑70 CGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATC > 1:814921/1‑71 CGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAA > 1:1059630/1‑69 TGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT < 1:3167636/70‑1 TGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG < 1:1670347/59‑1 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA < 1:149713/55‑1 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC > 1:3161052/1‑35 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC > 1:777365/1‑35 CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG < 1:3720564/71‑1 CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG < 1:2326377/53‑1 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG < 1:1506309/68‑1 TGCTGGGTATGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC < 1:4659929/45‑1 CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTC < 1:2944140/71‑1 CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA < 1:2334901/53‑1 CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA < 1:1566112/53‑1 CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA < 1:1382782/53‑1 CTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGATACAAATCTCTGGACGAAGGT < 1:1176885/70‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:1656129/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:1449647/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:1045075/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:3935939/71‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:4664039/71‑1 GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:4985085/70‑1 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAA < 1:4135756/70‑1 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT > 1:1891307/1‑41 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT > 1:1810406/1‑41 AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGA < 1:4126427/60‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAG < 1:4957525/70‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAG < 1:4239308/70‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG < 1:4586273/66‑1 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG < 1:3776905/71‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:3626365/45‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:2893125/45‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:2837082/45‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:4906145/45‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:4406528/45‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG < 1:5114718/38‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTC > 1:2734536/1‑71 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTC < 1:3130512/71‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT < 1:1536945/48‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:2029893/44‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG < 1:4177908/37‑1 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACGAATCTCTGGACGAAGGTCAGAAAGTGTCC > 1:1800980/1‑71 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG < 1:3284131/53‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172376‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC < W3110S.gb/3920281‑3920213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |