| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 55 (1.050) | 33/96 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
ATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA > W3110S.gb/2172241‑2172373 | atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:1619006/69‑1 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt < 1:2338518/70‑1 (MQ=255) gTCATTAATCCTTCGTCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:3905457/71‑1 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt < 1:737495/60‑1 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt < 1:4885136/60‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt > 1:4867791/1‑60 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt > 1:4603409/1‑60 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt > 1:2239817/1‑60 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:2074546/71‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:3109249/1‑69 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:3976978/1‑71 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg < 1:4012878/70‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg < 1:4473065/69‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:1860896/71‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:3441965/71‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:3581741/1‑71 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:4869039/71‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt > 1:4338306/1‑51 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt > 1:1764085/1‑51 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:2340749/1‑66 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:3377927/1‑66 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:2077441/70‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:1803347/47‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:2293771/47‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:4064953/47‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:2576779/47‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGGTCTTACCCAGCAATAGTGGacac > 1:979172/1‑71 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTCACCCAGCAATAGTGGacac > 1:1786550/1‑71 (MQ=255) cGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:1792498/65‑1 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGc > 1:1130025/1‑71 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:3991855/55‑1 (MQ=255) aaGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:4137982/1‑69 (MQ=255) aaGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:2930843/1‑69 (MQ=255) aaGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:2416257/1‑69 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:417306/71‑1 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:465293/71‑1 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:3114444/1‑69 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:1093072/53‑1 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:3109979/53‑1 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:4359503/1‑46 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:3199991/1‑64 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:808687/1‑64 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:33809/52‑1 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:2640539/52‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:1358717/1‑46 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:2388791/1‑46 (MQ=255) aCTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:3270613/1‑44 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:586656/71‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:2468325/1‑71 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:4913232/39‑1 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:2409677/39‑1 (MQ=255) tCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:4111921/1‑69 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:352683/1‑39 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag > 1:2372543/1‑71 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag > 1:3816871/1‑71 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:2648312/71‑1 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:1686223/71‑1 (MQ=255) cTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:3268066/1‑69 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:627247/68‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:2818439/71‑1 (MQ=255) gcGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:4585676/68‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:2405354/1‑52 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:140887/1‑71 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:3443035/71‑1 (MQ=255) agaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:4673578/70‑1 (MQ=255) gaATAACGGCCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:4983639/1‑67 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:241385/1‑71 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:3918669/1‑71 (MQ=255) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:3720678/66‑1 (MQ=40) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:2008031/70‑1 (MQ=40) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:1925951/71‑1 (MQ=39) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:5016909/1‑41 (MQ=40) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:4576255/1‑70 (MQ=37) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca > 1:3634213/1‑71 (MQ=34) | ATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA > W3110S.gb/2172241‑2172373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |