| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 80 (1.500) | 34/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173506‑2173565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG < W3110S.gb/3932933‑3932866 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG < 1:4900286/71‑1GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG < 1:2063323/71‑1GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG < 1:4906077/71‑1GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG < 1:1834862/71‑1 AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT > 1:4433097/1‑71 ACAATTTGAAAACAAGAACCTCTCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTG > 1:4050180/1‑71 CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG < 1:1650295/68‑1 AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCC < 1:3537728/71‑1 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCC < 1:847807/70‑1 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT > 1:2403208/1‑66 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT > 1:185194/1‑66 TGAAAAGAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT > 1:4269460/1‑71 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT > 1:4470246/1‑71 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC < 1:1684660/71‑1 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC > 1:1126178/1‑70 CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA < 1:680128/71‑1 CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCG < 1:447872/55‑1 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA > 1:150209/1‑61 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA < 1:4605375/54‑1 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGT‑GTGCCGATTTTAAATTCAACCAGAC > 1:1405779/1‑71 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGAT > 1:2796051/1‑54 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGAT > 1:3380044/1‑54 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGAT > 1:2312587/1‑54 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGAT > 1:4505171/1‑54 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG > 1:3411690/1‑47 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG > 1:1739284/1‑47 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG > 1:2608928/1‑46 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG > 1:3696585/1‑46 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG > 1:4839668/1‑46 TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGT > 1:573424/1‑71 GGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA < 1:2097930/71‑1 GTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG > 1:1244656/1‑71 GTGTCCATATTACGTGGGTAGGATCACACTTCGGT < 1:4315318/35‑1 aGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTT > 1:1742701/2‑46 TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG < 1:2190135/70‑1 TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG < 1:4897687/70‑1 TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG < 1:4986491/70‑1 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCG > 1:5025897/1‑70 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCG > 1:1868244/1‑70 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAA‑CAGACGGTTATAAAGCGGG < 1:680296/71‑1 TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTA < 1:509692/45‑1 CATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGA > 1:4941948/1‑71 ATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTA < 1:2557397/42‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACG < 1:759880/71‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACG < 1:3394501/71‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACG < 1:4118763/71‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC < 1:3178534/49‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC < 1:578812/49‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC < 1:3283866/46‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC < 1:3289610/46‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC < 1:1399378/46‑1 TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC < 1:1545418/46‑1 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:921177/1‑70 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:1898992/1‑70 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:249530/1‑70 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA > 1:1999685/1‑51 TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAG > 1:2154633/1‑50 TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:658106/1‑69 TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG > 1:2386061/1‑69 TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA > 1:3812452/1‑56 TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA > 1:4926320/1‑50 TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA > 1:4931945/1‑50 TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA > 1:4156764/1‑50 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCGGACGGTTATAA > 1:1839076/1‑58 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA < 1:3004456/70‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA < 1:1721961/70‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA < 1:669068/70‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA < 1:873531/70‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA < 1:1353899/70‑1 ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAA > 1:395059/1‑58 ACGTGGGTAGGATCACACTTAGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA < 1:5068905/70‑1 CGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA < 1:3398498/71‑1 GTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCTGACGGTTATAAAGCGGGACGGAAGAG > 1:4989712/1‑71 GTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG < 1:4150914/62‑1 GTAGGATCACACTTCGGTGGTCCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGT < 1:1760225/71‑1 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA < 1:1467906/70‑1 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA < 1:1129548/70‑1 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA > 1:255165/1‑70 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA < 1:2600620/70‑1 GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA > 1:4106962/1‑70 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCTGGACGGAAGAGGCGTCATAGG < 1:3332471/71‑1 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG < 1:659352/71‑1 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA > 1:162901/1‑60 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAA > 1:289926/1‑46 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACG > 1:1800827/1‑39 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACG > 1:3424327/1‑39 TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACG > 1:764276/1‑39 CACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA < 1:1444727/42‑1 CACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA < 1:133688/42‑1 CACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA < 1:4229645/42‑1 CACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA < 1:4719758/42‑1 ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAA > 1:2070668/1‑45 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173506‑2173565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG < W3110S.gb/3932933‑3932866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |