| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 80 (1.500) | 34/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 153 total aligned reads displayed.
CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932863‑3933000 | ccTATGACGCCTCTTCCGTCCAGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:3332471‑M2/71‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATccc < 1:816405‑M2/9‑1 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:1129548‑M2/70‑7 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:4106962‑M2/1‑64 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGGACCACCGAAGTGtgatcctac < 1:1760225‑M2/71‑10 (MQ=255) tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg > 1:4773817‑M2/55‑71 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacg < 1:3398498‑M2/71‑15 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:4090726‑M2/54‑71 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:3004456‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:1721961‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:873531‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:669068‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:1353899‑M2/70‑16 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:1476544‑M2/22‑1 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:4042411‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:249530‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1898992‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:658106‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:2386061‑M2/1‑53 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:4118763‑M2/71‑20 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:759880‑M2/71‑20 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:4941948‑M2/1‑50 (MQ=255) cGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:5025897‑M2/1‑47 (MQ=255) cGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:1868244‑M2/1‑47 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:2190135‑M2/70‑26 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:4897687‑M2/70‑26 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:4986491‑M2/70‑26 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:2070668‑M2/1‑44 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagataAGTGATCCCGGGCCTCGc > 1:3552108‑M2/41‑58 (MQ=255) ttATAACCGTCCGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:1839076‑M2/1‑43 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcc < 1:2097930‑M2/71‑32 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:3812452‑M2/1‑40 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg < 1:1444727‑M2/42‑3 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg < 1:133688‑M2/42‑3 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATccc < 1:3461952‑M2/9‑1 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggccta > 1:573424‑M2/1‑38 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGc > 1:2137843‑M2/34‑70 (MQ=255) gTCTGGTTGAATTTAAAATCGGCAC‑ACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:1405779‑M2/1‑34 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:1529576‑M2/38‑1 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2966350‑M2/38‑1 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:4926320‑M2/1‑34 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:4156764‑M2/1‑34 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:4931945‑M2/1‑34 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1031625‑M2/40‑1 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:3884263‑M2/40‑1 (MQ=255) gccgcgtctccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:4826244‑M2/40‑1 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:680128‑M2/71‑40 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:3178534‑M2/49‑20 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:578812‑M2/49‑20 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:1684660‑M2/71‑45 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttc > 1:1126178‑M2/1‑27 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:3283866‑M2/46‑20 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:1545418‑M2/46‑20 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa < 1:5024759‑M2/50‑1 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc < 1:627596‑M2/51‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:509692‑M2/45‑24 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatat < 1:2557397‑M2/42‑21 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:4952388‑M2/49‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:2645755‑M2/26‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:1774118‑M2/26‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:4176761‑M2/18‑71 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:2559883‑M2/17‑45 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:2169700‑M2/17‑70 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:2755730‑M2/40‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:5070124‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:3633614‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:3983527‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCt < 1:725928‑M2/53‑1 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca > 1:4470246‑M2/1‑19 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttcttttca > 1:4269460‑M2/1‑19 (MQ=255) aTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:3380044‑M2/1‑18 (MQ=255) aTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:4505171‑M2/1‑18 (MQ=255) aTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:2796051‑M2/1‑18 (MQ=255) aTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:2312587‑M2/1‑18 (MQ=255) tCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg < 1:4605375‑M2/54‑38 (MQ=255) cGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:447872‑M2/55‑40 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaatt < 1:3537728‑M2/71‑57 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaat < 1:847807‑M2/70‑56 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTc < 1:1086708‑M2/61‑1 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatggacacaggcctaagagaggttcttgttttcaaattgt > 1:4050180‑M2/1‑13 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:2915131‑M2/8‑71 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc < 1:4900286‑M2/71‑61 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc < 1:2063323‑M2/71‑61 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc < 1:1834862‑M2/71‑61 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattg < 1:1650295‑M2/68‑58 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:1739284‑M2/1‑11 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:3411690‑M2/1‑11 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:3696585‑M2/1‑10 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:4839668‑M2/1‑10 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:2608928‑M2/1‑10 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1497949‑M2/5‑58 (MQ=255) atcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:2563169‑M2/4‑67 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:4318346‑M2/3‑71 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:409888‑M2/3‑71 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:4744821‑M2/3‑71 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1769743‑M2/2‑55 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:2512363‑M2/2‑55 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:3975701‑M2/2‑70 (MQ=255) AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:3088598‑M2/71‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa > 1:4380085/1‑69 (MQ=255) | CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932863‑3933000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |