New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 3748799 =2 (0.040)66 (1.240) 39/98 NT 97.1% coding (184/984 nt) tnaB tryptophan transporter of low affinity
?W3110S.gb 4056222 = NA (NA)intergenic (‑564/+15) yrhB/insB hypothetical protein/IS1 transposase InsAB'

TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3748866‑3748799
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC  >  W3110S.gb/4056222‑4056290
                                                                                                                                         
TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGG                                                                     >  1:3839060/1‑70
 TTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:2112239/70‑1
  TCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAA                                                                  >  1:3977970/1‑71
  TCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTA                                                                   <  1:4761309/70‑1
              TTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                       >  1:1179349/1‑70
              TTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                       >  1:2692154/1‑70
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:3241461/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:4909451/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:2147948/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:2425812/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:2676607/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:1012995/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:3733550/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:4558888/1‑71
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTT                                                      <  1:3341408/70‑1
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTT                                                      <  1:672106/70‑1
               TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACT                                                             >  1:2383040/1‑63
                ATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC                                                           >  1:1089650/1‑64
                 TCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATT                                                   >  1:3459802/1‑71
                 TCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTAT                                                    <  1:2016057/70‑1
                   CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 >  1:4578635/1‑71
                      ATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAG                                              >  1:2745650/1‑71
                        CATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:3811709/47‑1
                          TTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT                                                                 <  1:1180677/48‑1
                            GCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTT                                         <  1:1847270/70‑1
                             CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTA                                       <  1:4127961/71‑1
                             CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTT                                        <  1:785551/70‑1
                             CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTT                                        <  1:2592680/70‑1
                             CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTT                                        <  1:2634179/70‑1
                               TGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATG                                     >  1:1764942/1‑71
                                GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT                                    >  1:2309193/1‑71
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                   <  1:2177948/71‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT                                    <  1:4423789/70‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATG                                     <  1:4636579/69‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:4774758/38‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:4118076/38‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:2133667/38‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:4771570/38‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:2442852/38‑1
                                 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT                                                                    <  1:2211622/38‑1
                                  TTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATT                                                   <  1:1710890/54‑1
                                    TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 <  1:3448677/54‑1
                                    TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 >  1:3401356/1‑54
                                    TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 <  1:1505220/54‑1
                                    TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 >  1:2835025/1‑54
                                    TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAA                                                                  >  1:1686983/1‑37
                                       AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT                              <  1:438567/70‑1
                                       AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT                              <  1:4994128/70‑1
                                        ATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAA                            >  1:1342323/1‑71
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                           <  1:2950273/71‑1
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTT                                        <  1:3176957/58‑1
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTT                                          >  1:2094084/1‑56
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTT                                          >  1:1666643/1‑56
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTT                                          >  1:4250723/1‑56
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGT                                           <  1:4490052/55‑1
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATA                                               <  1:4325568/51‑1
                                         TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTG                                                  <  1:1812985/48‑1
                                           CTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGC                         <  1:3368488/71‑1
                                               ATTCCGGGTTTTTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC                       <  1:3742900/69‑1
                                               ATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGA                     >  1:607236/1‑71
                                                TTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 <  1:442467/42‑1
                                                 TCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                           <  1:3590299/63‑1
                                                 TCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                           <  1:2056253/63‑1
                                                 TCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTT                                         <  1:1565191/49‑1
                                                   CGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAC                 >  1:2994670/1‑71
                                                   CGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGA                  <  1:4886788/70‑1
                                                     GGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT               >  1:3024977/1‑71
                                                     GGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT               >  1:125036/1‑71
                                                       TTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG             <  1:68478/71‑1
                                                       TTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGC                         <  1:1815961/59‑1
                                                        TATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            >  1:1914772/1‑71
                                                         ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            <  1:3892788/70‑1
                                                         ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            <  1:1888364/70‑1
                                                         ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            <  1:1278325/70‑1
                                                         ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTC                                  >  1:4424008/1‑48
                                                         ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT                                             <  1:899584/37‑1
                                                            GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            >  1:4022854/1‑67
                                                            GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTA                                       >  1:2710673/1‑40
                                                                TTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCA      <  1:62079/69‑1
                                                                   GGGTAATGACTCCAACTTATTGTTAGTGTTTTATGTTCAGAT                              <  1:1471761/42‑1
                                                                   GGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC  <  1:4974037/70‑1
                                                                                                                                         
TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3748866‑3748799
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC  >  W3110S.gb/4056222‑4056290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.