| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 146 (3.040) | 9/110 | 0.3 | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCC > W3110S.gb/274314‑274421 | cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1458716/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:4644409/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:583239/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:2028923/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:4530204/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1760092/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:2326844/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:65662/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1631096/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:2509556/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1531043/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:2673166/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:4171936/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1189641/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:4143244/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:754983/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:4046989/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:3942628/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:3791102/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1046367/1‑62 (MQ=33)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg > 1:2278788/1‑61 (MQ=31)cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg > 1:2979180/1‑61 (MQ=31) cTATGTCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:625330/60‑1 (MQ=255) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:3749661/60‑1 (MQ=40) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:1173053/60‑1 (MQ=40) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:4265921/60‑1 (MQ=40) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:711363/60‑1 (MQ=40) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:1276674/60‑1 (MQ=40) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:2757567/60‑1 (MQ=40) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcggc < 1:1307665/62‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcggc < 1:877226/62‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcggc < 1:3296794/62‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc < 1:4175934/62‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc < 1:3093606/62‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc < 1:1611825/62‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc < 1:3411046/62‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc < 1:1103893/62‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGcc < 1:2716975/61‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTCATGAGCTGGCGGccc < 1:4290173/62‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcggc < 1:4314797/59‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:3331632/62‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:1146787/62‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:1958326/62‑1 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa < 1:1062951/61‑1 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa < 1:351446/61‑1 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa < 1:2176988/61‑1 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa < 1:2217774/61‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt > 1:2337307/1‑36 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa > 1:531642/1‑60 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt > 1:3469300/1‑61 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt > 1:1172808/1‑61 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt > 1:1712420/1‑61 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt < 1:1172718/59‑1 (MQ=255) aGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat < 1:3406128/62‑1 (MQ=255) aGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat < 1:2438123/62‑1 (MQ=255) ggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattatt > 1:974622/1‑61 (MQ=255) ggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGAttatta > 1:744214/1‑62 (MQ=255) ggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGAttatta > 1:2888393/1‑62 (MQ=255) cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt > 1:2288518/1‑55 (MQ=255) cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt > 1:2445939/1‑55 (MQ=255) cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt > 1:625726/1‑55 (MQ=255) tGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc < 1:486559/62‑1 (MQ=255) tGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc < 1:4309115/62‑1 (MQ=255) tGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc < 1:1712153/62‑1 (MQ=255) tGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc < 1:135005/62‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:4588810/42‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:4669098/42‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:859862/42‑1 (MQ=255) ttCGCACCTTGCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa < 1:300381/44‑1 (MQ=255) tCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:3369750/40‑1 (MQ=255) | CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCC > W3110S.gb/274314‑274421 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |