New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	566000 =	NA (NA)	43 (0.900)	10/110	0.3	100%	intergenic (+90/‑56)	ybcD/insE	DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE
	?	W3110S.gb	= 576913	0 (0.000)					coding (78/498 nt)	ybcS	predicted lysozyme

CATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAG  >  W3110S.gb/565946‑566053                                                       |                                                      cATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTa                                                <  1:1181582/62‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:1810430/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:2515821/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:1902939/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:3954733/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:1640203/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:4328368/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:122453/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:76324/60‑1 (MQ=255)           tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                        <  1:1092917/60‑1 (MQ=255)            cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                     >  1:3923757/1‑62 (MQ=255)            cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                     >  1:3617793/1‑62 (MQ=255)            cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                     >  1:3472195/1‑62 (MQ=255)            cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                     >  1:2624873/1‑62 (MQ=255)            cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                     >  1:2474678/1‑62 (MQ=255)            cTGTGCACAGGACGTTCCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                     >  1:2563249/1‑62 (MQ=255)                       aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                           >  1:4234200/1‑61 (MQ=255)                       aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                           >  1:4112944/1‑61 (MQ=255)                       aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                           >  1:926280/1‑61 (MQ=255)                       aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                           >  1:2210583/1‑61 (MQ=255)                       aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                           >  1:1194394/1‑61 (MQ=255)                        cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                     >  1:2055685/1‑50 (MQ=255)                        cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                          >  1:1267512/1‑61 (MQ=255)                        cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                          >  1:1427524/1‑61 (MQ=255)                        cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                          >  1:1845992/1‑61 (MQ=255)                        cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                          >  1:3206799/1‑61 (MQ=255)                        cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                          >  1:3908199/1‑61 (MQ=255)                            gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg                     <  1:53653/62‑1 (MQ=255)                            gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg                     <  1:136058/62‑1 (MQ=255)                            gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg                     <  1:2191076/62‑1 (MQ=255)                            gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg                     <  1:3004764/62‑1 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:3645633/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:3114507/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:915808/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:2379785/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:4306903/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:2435974/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:4423205/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:4525328/1‑62 (MQ=255)                                   tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa              >  1:655560/1‑62 (MQ=255)                                           gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT‑AACTCtcagt     <  1:2578982/62‑1 (MQ=255)                                            cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt     <  1:4606592/62‑1 (MQ=39)                                            cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt     <  1:787969/62‑1 (MQ=39)                                            cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt     <  1:2913927/62‑1 (MQ=39)                                            cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt     <  1:1008515/62‑1 (MQ=39)                                               ccGTAATATGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag  >  1:3512769/1‑62 (MQ=18)                                                       |                                                      CATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAG  >  W3110S.gb/565946‑566053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.