Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3212179	3212248	70	61 [0]	[0] 27	rpoD	RNA polymerase, sigma 70 (sigma D) factor

GAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTC  >  W3110S.gb/3212117‑3212178                                                              | taaGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:327154/61‑1 (MQ=255) gAAGCGATCACCTATGTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1087136/62‑1 (MQ=255) gAAGCGATCACCTATCTTCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:538844/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTAGGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1400512/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:59885/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:406498/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:443768/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:45253/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:47190/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:485352/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:488780/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:53575/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:536218/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:541596/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:542076/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:575236/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:584455/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1044999/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:644640/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:674722/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:701885/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:757416/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:802804/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:805349/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:815609/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:847294/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:863656/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:870255/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:886799/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:936252/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:948823/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1335445/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1040414/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1097916/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1102641/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1105612/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1110530/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1114946/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1130870/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1191119/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1211479/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1268664/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1275813/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:133410/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:404845/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1340291/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1350358/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:13604/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1411656/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1448940/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1460263/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:153289/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:177028/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:194028/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:212029/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:266260/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:365079/62‑1 (MQ=255) gAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTATc  <  1:595107/62‑1 (MQ=255)  aaGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:606490/61‑1 (MQ=255)  aaGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:1049067/61‑1 (MQ=255)  aaGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTc  <  1:369907/61‑1 (MQ=255)                                                              | GAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTC  >  W3110S.gb/3212117‑3212178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑