Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4177816	4177886	71	65 [0]	[0] 50	gspJ	predicted general secretory pathway component, cryptic

CCAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCG  >  W3110S.gb/4177754‑4177815                                                              | ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:506008/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:214858/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1029152/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:27039/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:311196/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:323725/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:325047/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:32917/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:393558/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:420162/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:423564/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:423817/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:440582/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:467038/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:491481/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:257305/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:553555/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:571615/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:591646/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:592248/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:593180/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:605394/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:638515/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:691405/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:691546/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:745296/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:764903/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:77787/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:91247/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:992305/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1331766/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1031808/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:109974/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1118013/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1141439/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1186414/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1211038/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1214381/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1231419/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1246405/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1262759/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1270762/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1320957/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1337137/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1376641/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1418622/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:153109/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1453578/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1438425/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1424514/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1407862/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1399008/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1396933/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1393019/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGTTTGTGCTTCACTAAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1052276/62‑1 (MQ=255) ccAGTGAACAGTGAGTAAGGATTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1381181/62‑1 (MQ=255)  cAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:201804/61‑1 (MQ=255)  cAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1053558/61‑1 (MQ=255)       aaCAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:10686/56‑1 (MQ=255)        aCAGTGAGTAAGGTTTGTGCTTCACTGAGTGGAGCCAGCGGATCGCGACTTTGCg  <  1:550059/55‑1 (MQ=255)        aCAGTGAGTAAGGTTTGTGCATCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:419057/55‑1 (MQ=255)                       tgtgCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:301995/40‑1 (MQ=255)                       tgtgCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:824680/40‑1 (MQ=255)                           cTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:418263/36‑1 (MQ=255)                           cTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCg  <  1:1389487/36‑1 (MQ=255)                                                              | CCAGTGAACAGTGAGTAAGGTTTGTGCTTCACTGAGAGGAGCCAGCGGATCGCGACTTTGCG  >  W3110S.gb/4177754‑4177815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑