Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4280917	4280995	79	58 [0]	[0] 31	[soxS]	[soxS]

TTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGC  >  W3110S.gb/4280855‑4280916                                                              | ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:594480/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:275833/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:289651/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1015730/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:347321/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:357535/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:370872/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:403351/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:531936/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:540912/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:544692/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:571164/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:573349/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:57986/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:331889/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:667308/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:694270/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:707784/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:72580/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:778397/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:78206/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:845496/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:90434/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:910443/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:918410/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:977801/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:988878/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1340753/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1138804/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1170368/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1180000/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1205636/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1231143/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1300384/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:131324/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1313913/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1322523/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1401060/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1416305/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:148499/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:251897/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:228273/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:21522/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:20380/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:192246/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:171642/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:168381/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:164234/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:159244/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:157079/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCCTGATTATTTTGCGACTACATCAATGTTAAGCGGc  <  1:269073/62‑1 (MQ=255) ttCGTTGCAAGTACCACTTTGAATAGCATGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:821646/62‑1 (MQ=255)  tCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:889699/61‑1 (MQ=255)  tCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:574469/61‑1 (MQ=255)   cGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:89335/60‑1 (MQ=255)                   ttGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1258128/44‑1 (MQ=255)                   ttGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:96843/44‑1 (MQ=255)                    tGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGc  <  1:1229941/43‑1 (MQ=255)                                                              | TTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGC  >  W3110S.gb/4280855‑4280916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑