Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	581072	581180	109	79 [0]	[1] 41	tfaD	DLP12 prophage region; ECK0553:JW5815:b0561; predicted tail fiber assembly protein

CGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACA  >  W3110S.gb/581010‑581071                                                              | cGTTACCGGAAGATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:298996/1‑62 (MQ=25) cGTTACCGGAAAATGTTCCCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:850004/1‑62 (MQ=25) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAATTGGAACGGTACa  >  1:1236788/1‑62 (MQ=25) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:421864/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:52852/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:500322/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:487409/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:487140/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:486335/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:480023/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:473563/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:451936/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:439328/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:529640/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:391547/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:384028/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:363479/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:359887/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:311789/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:310880/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:29331/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:797451/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:98845/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:975537/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:973885/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:966994/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:934966/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:926381/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:887712/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:855487/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:802582/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:269114/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:783116/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:771717/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:733062/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:722663/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:719909/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:621671/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:609476/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:555442/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1094407/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1185533/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1177413/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1168494/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1166192/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1165382/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1151955/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1137823/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1135876/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:109807/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1204103/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1086679/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1079706/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1077956/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1072857/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1053875/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:103662/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1028018/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:101580/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:189872/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1012549/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:252917/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:250918/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:22424/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:221785/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:217657/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:200243/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:195121/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:272191/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:174863/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:169200/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1458005/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1414471/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1391688/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1345937/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1337660/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1279162/1‑62 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1215658/1‑62 (MQ=35) cGTTACAGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa  >  1:1019661/1‑62 (MQ=25)                                                              | CGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACA  >  W3110S.gb/581010‑581071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑