Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	581072	581180	109	79 [0]	[1] 41	tfaD	DLP12 prophage region; ECK0553:JW5815:b0561; predicted tail fiber assembly protein

GATGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGAAAAAA  >  W3110S.gb/581180‑581242  |                                                              gATGCTGTAGATCTGGAAATCGCAACGGAGGAAG‑AACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1196842/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaagaa  <  1:1193032/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:865678/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:450861/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:483242/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:513746/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:542789/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:636214/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:685585/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:695380/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:710067/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:770781/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:820343/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:353676/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:882353/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:886848/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:899301/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:929595/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:930522/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:981367/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:994463/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1041430/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1044990/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1089923/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1111618/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1127045/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1132548/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1218749/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1377124/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1406783/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1454191/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:1460173/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:14723/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:155435/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:198772/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:271009/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:276699/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:295100/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:336211/62‑1 (MQ=255)  aTGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:359180/62‑1 (MQ=255)  aTGCTCTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGaaaaaa  <  1:778943/62‑1 (MQ=255)  |                                                              GATGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAACCTCATTGCTGGAAGCCTGGAAAAAA  >  W3110S.gb/581180‑581242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑